BAC Information

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BAC

Clone NameMSMg01-468O02
Chromosome13 (Build37)
Map Location 79,051,847 - 79,052,020
singlet/doubletsinglet
Overlap geneEG666883
Upstream gene1110033M05Rik, 1700013G10Rik, Nr2f1, EG666856, LOC268676, LOC100042683, LOC622365, LOC100043052
Downstream geneLOC666925
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468O02.T7 (MSMg01no468_o02.b1)MSMg01-468O02.TJ (MSMg01no468_o02.g1)
ACCAG552248AG552249
length919799
length of high quality
(start - end)
174 (51 - 224)251 (75 - 325)
definitionCHROMAT_FILE: MSMg01no468_o02.b1 PHD_FILE: MSMg01no468_o02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:15 2005CHROMAT_FILE: MSMg01no468_o02.g1 PHD_FILE: MSMg01no468_o02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGA
ATTCATGGAGTATTTCTTTAAATTTTTAGAAATGAATTTGATTCTTATTC
AAAACTTGGGTCAAATACGTACAACTGACAAAAAAAGTTTATAATCCACA
CTCCTAAATGAAAATAGAAATAAGTTTCTCTTATGTAACCCATACCTCTT
CTCTTGAGCGTTGATTCTACTTGTTGGTCTGCTGTACGCATGGGAAGTGT
TACATTTTAACACTAATATGATGTGAGGAGCGGCTGTGTTAGCAGTCCCA
AAGGCACCAGTCACTGCCGCTAATTTTTATGATTTGTTCCTGACTTCCTC
ATATAATTCGCATTCATTTTGATAGTTGCTCATATGTACTCATTACAATG
TCTGAATCCATTATTTAATCACTATATGCCCACGTTTGTCTCTGATATAT
TTCCTTATTCTGTTATACTCTTCCACATCTTTGATTATCGCTTTTTTCTT
CTCTTTTTCCACTGCTTCTTTTTTATCGTATTTATATTAATTCTTTTATC
TTATTATATTTTTCTTAATCATATAACAATCAAAATACGCAAAAACGATT
ACTCTCGCAATACTCCTTCCCTATTATATTTGCTTTCTCCCTCTATCCTC
ATTTCGCTCTATATTTTTTATTTTTTCTCTCTCCCTTCATCTTATTTTAA
TCAATAAATATCGCCGCTCCCTTCCTTTAAAAATATATTTTATTTGTACC
TCCTTTTTTCTCTCTCTTTCATTTTCTTTTACTNTTTATTCTGTATCTTA
TCTATTTAAGATTACCCTTATTCTTTTTTAATTATTATTCCTATCTGTTG
TTTTCATACCATTTTATATTTCTTATACATACTCTGTATCTATTTATTTA
CTACCCTATTCCCATTCTA
GATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAGAAATGTTCAACATCCTTAATCATCAGGTAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCTGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAAC
ACTCCTCTTTGTTGGTGGGATTGCAAGCTTGTACAACCTCTCTGGAAATC
AGTCTGGCGTGTCGTCAGAAAATTTGTTTTATTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGGATATATCCAGAAGATGCCCCAGCGGGTAAGAAG
GACACATGGTCCAGTATGCGCATACGATCCTGATTTATAATAGCCCGAAG
CTGGAAAGAACCCAGATGCCCCGCAACCGAGGAATGGATACAGAACGTGT
GGTGCACTACACAATGGAGTGCTACTCAGCTATTATATAGAATGAACGTA
TGAACGTCCTACCCTAATGGATGGCGCCGTTAGTGTTTCTATCTTGAGTG
AAGAAATACATTCGCATATGAATTTCTTGCAATATGTAGTCCCTTGATTA
GTGGCACTTTAGCCTCCATATCTTTGTAATCCCCTCACTTTTTAAAATAA
TTTTCTTATACTCTCATCATTTTTCTTTTATACATGTATTTCCGAATTCT
TGGAACTTCTCTTTCTTCCTCCTTTTTTAACCTTTTAAACCTTACTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_o02.b1 MSMg01no468_o02.b1 CHROMAT_FILE:
MSMg01no468_o02.b1 PHD_FILE: MSMg01no468_o02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:15 2005
         (174 letters)



>mm_chr13_79051647_79052220
          Length = 574

 Score =  308 bits (159), Expect = 2e-88
 Identities = 171/175 (97%), Gaps = 2/175 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcatggagtatttctttaaatttttagaaatgaatttgattcttattcaaaacttggg 60
           ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 attcatggagtattttttttaatttttagaaatgaatttgattcttattcaaaacttggg 315

                                                                       
Query: 61  tcaaatacgtacaactgacaaaaaaagtttataatccacactcctaaatgaaaatagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tcaaatacgtacaactgacaaaaaaagtttataatccacactcctaaatgaaaatagaaa 255

                                                                  
Query: 121 taagtttctcttatgtaacccatacctcttctcttgag-cgttgattctacttgt 174
           |||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 254 taagtttctcttatgtaacccatacctcttctcttgagtc-ttgattctacttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 574
Length adjustment: 8
Effective length of query: 166
Effective length of database: 566
Effective search space:    93956
Effective search space used:    93956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)