GCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGAGGATCC
GCGGAATTCACTGTTTCCAGTCATCAGATTTGGCTTTAAAGATCACACTT
TGCTAGTATTATTAATAAATCCATTTACTTACAACTTGGATTAAGTCTGT
AGTCTTTTTCTGGTGGTGTTTAACTCCATAATCCATAATGAACAGTTCAT
TCTAGAATGAAAAACAATGTTTAAAATGTATCATCTGTCATTTAGTAACT
GCTGGAAGTCAGGTCTATCAGCCCTTGCTCAATGTCCAGTCTCAGCTCAC
AACTGTTACAGGTGAGAGATATATAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAAACAAAGGAAGGACAGAAGGAAG
GAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGG
AAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGG
AAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGG
AAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGATTAT
ATCTCCGGTCCAATCCAAGTTTATCTAAGCACTATATCACATGTTTATGA
CGTCTAACAGATCCTTACTTAAGACAAGGTAAGCCAAACTGCTGTTATAT
CCTAATCTAATTATAATTAAACTCTGTTTTACTTCTGATAGGGCACGTCT
GCGCCCATCCATA

CTTCTCCCTCTCCTTCCTNNTNTTTCTCTCCCAAAGATAXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCATGGATTCAGTGCAAAAACAAACAAACAAATACACTAGAGATCCTT
TCTGTGAGGTGGGGTAAGTAGGGGTGGGTGAAAAAACCATTGGGGGGCCC
CTGGAAAAAGTTGCAAAGGTGCCTTTTTTTAAAAAACCCCCTCCGAAACG
TTCCCGCCCCTTTGGAGGCCAAAAAATACCCAGGCACCTCTTCTCCCCTA
AAACAGTTTTGAAAAAAAATACAAAAAACCCCCTTTTCCCCGTTATTTTA
AACAAAAAAAATTTTTTTTTTTTTTCCCCCCCCCCTAACCGGGGGTCTAA
ATAAATTTGCCCCATTTTCCCCCGCGCTCCTTCTCTCATCCCCCCGACGG
ACAAAAATCCTCTTTACTTCTTCCATCTACACCCTCCCCCCCCCCCCTTA
CTTATTTTACCCCTTTTTTCCCCTTTACCCCTCCCCTTTCCCCATTTTTT
CTTTTCCCCCTCTCCCTCCAATTTCTTTTCCCTTTCCTTCCTTATTTATT
TTTCCCACTTTCCTACTCCCCCTATTCTTTTTCCCTTTTTC

Query= MSMg01no469_b15.b1 MSMg01no469_b15.b1 CHROMAT_FILE:
MSMg01no469_b15.b1 PHD_FILE: MSMg01no469_b15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:33 2005
         (516 letters)



>mm_chr13_33081111_33082026
          Length = 916

 Score =  783 bits (405), Expect = 0.0
 Identities = 438/457 (95%), Gaps = 17/457 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcagatttggctttaaagatcacactttgctagtattattaataaatccatttacttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 atcagatttggctttaaagatcacactttgctagtattattaataaatccatttacttac 388

                                                                       
Query: 61  aacttggattaagtctgtagtctttttctggtggtgtttaactccataatccataatgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 387 aacttggattaagtctgtagtctttttctggtggtgtttaactccataacccataatgaa 328

                                                                       
Query: 121 cagttcattctagaatgaaaaacaatgtttaaaatgtatcatctgtcatttagtaactgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cagttcattctagaatgaaaaacaatgtttaaaatgtatcatctgtcatttagtaactgc 268

                                                                       
Query: 181 tggaagtcaggtctatcagcccttgctcaatgtccagtctcagctcacaactgttacagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tggaagtcaggtctatcagcccttgctcaatgtccagtctcagctcacaactgttacagg 208

                                                                       
Query: 241 tgagagatatatagagagagagagagagagagagagagagagagagagagagagagagag 300
           |          |  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 t----------t--agagagagagagagagagagagagagagagagagagagagagagag 160

                                                                       
Query: 301 agagaaacaaaggaaggacagaaggaaggaaggaaaggaaaggaaaggaaaggaaaggaa 360
           |||  |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 159 aga--aacaaaggaaggacagaaggaagggaggaa-ggaaaggaaaggaaaggaaaggaa 103

                                                                       
Query: 361 aggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 aggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaa 43

                                                
Query: 421 aggaaaggaaaggaaaggaaaggaaaggaaaggaaag 457
           ||||||||||||||||||||||||||||||  |||||
Sbjct: 42  aggaaaggaaaggaaaggaaaggaaaggaa--gaaag 8


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 239
Number of extensions: 72
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)