BAC Information

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BAC

Clone NameMSMg01-469O19
Chromosome13 (Build37)
Map Location 33,524,116 - 33,524,657
singlet/doubletsinglet
Overlap genenone
Upstream geneWrnip1, Serpinb1a, Serpinb1-ps1, Serpinb1c, Serpinb6b, Serpinb9, Serpinb9b, Serpinb1b, LOC628301, Serpinb9c, Serpinb9d, Serpinb9e, Serpinb9f, OTTMUSG00000000724
Downstream geneSerpinb9g, LOC100041370, EG619715, LOC382743, OTTMUSG00000000712, LOC193403, Vmn2r-ps94, OTTMUSG00000000720, Serpinb6c, Serpinb6a, Nqo2, 4930482L21Rik, Ripk1, Bphl, Tubb2a, LOC100042686, Tubb2b, 2310047M15Rik, 3110004L20Rik, LOC620132, EG666666
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469O19.T7 (MSMg01no469_o19.b1)MSMg01-469O19.TJ (MSMg01no469_o19.g1)
ACCAG553046AG553047
length771792
length of high quality
(start - end)
563 (42 - 604)470 (71 - 540)
definitionCHROMAT_FILE: MSMg01no469_o19.b1 PHD_FILE: MSMg01no469_o19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:40 2005CHROMAT_FILE: MSMg01no469_o19.g1 PHD_FILE: MSMg01no469_o19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:40 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATT
CATTTAATGTGCCGCAATCTATGGATCCCATATAAGAGTCATTTTCAAAG
ACTTTCTCTAAAGTGAACAAATTAATAATATCAAGGAGGGTAAACAGGAA
CACACATGTAATGTCAGATTCCAGAGTCAAAGATAAGTATATCTCTGTGA
GTGCCAAGCCAGTCTGGTTTATATATTATGTTCAAAAGAGCTTGGACTAC
ATAGTGAGTCTGTCAGGAACACTCAAGAATCTGGTCAATTATCAGATAGG
GTCAGAATCTGTCTCTGGATTTTCTGAATCCAGACTTGGCAACCTGTCTT
TTAAAAAGATATTAAAAGAAACAGATTCATAGTAAAAAGAGGAAAAATCA
GCATTATTCAATGTGGTCCCATTGAAGGGAGGAACTCACTATCCAGTGAG
GTCCGAAGCCTTTCACTGGGATTCCTGACCTGAGATCAAGGCAAACAAAC
AGAGTTGACAGAGCTAAGCTGCCAAGGTGTCATCCTGTCTATCATTATTC
CATCCTTGTATGACCCCACTCTGTCCTGCATGGGACTTCCAAGGCAGACT
TTCCTGCAGGGTCTACTTGGGTTCAGAAGGGAAGTGTGTCTCTCCATTTG
TTGCTGGTGTGCCATATACCATACACTGGGATTTTAGCACTATCCTTTGC
TTTACTGACAACTCTTCTATTACCTGAAACCATGATAGCGACCCAATTAT
GCCCTTGCATTACATACTTTG
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGCACTAAACCCATTTGGTCCTTGGTTTAT
ATTGGTTTGGAAACTTTTAATGACTGCTTCTATTTCTTAAGGGGTTATTG
GACTATTTATATGGTTTATCTGACCCAGATTTAACTTTAGTACTTGGTAT
CTGTCTGGAAATTTGTACATTTCATCCAGATTTTCCAGTTTTGTTGAGTA
TAGGCTTTTGTAGTAGGATCTGATGATTTTTTTTTTTTAATTTCCTTGGT
TTCAGTTGTTATGTCTCTCTTTTCATTTCTGAATTTTTTAATTTGGATAC
TGTCTCTGTGCCCTCTAGTTAGTCTGGCTAAGGGTTTAATCTATCTTATT
TTCTCAAAGAATCAGCTCCTGGTTTTGTTTATTCTTTGTATAGTTCTTTT
TGTTTCTACTTGGTTGATTTCAGTCCTGAGTTTTATTATTTTCTGCCATC
TACTCCTCTTGGGTATATTTGCTTCTTTTTTTTTTTCTAGAACTTTCCGA
TGTGCTATTAAGCTGCTAGCGTATGATGCCTTTACCTTGTCTTTGCAGCC
CTTAGAGCTATGAGTGTTGCTCTTAAAATTGCTTTCATTGTGTCTCCCAA
GCCTCGGTTATTTTGTCCCTCTCTTTTTCCTACATCCTAAAACGCCTTTT
ATTCCCCCGCTTTCCTCAACTTGCCTCCCTTTTTTTCCTTCTTCCCGCTT
TTTCTCCTTTCCTCCTGGTGTTGTTGGGCTTTTCCTCCGCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_o19.b1 MSMg01no469_o19.b1 CHROMAT_FILE:
MSMg01no469_o19.b1 PHD_FILE: MSMg01no469_o19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:40 2005
         (563 letters)



>mm_chr13_33523693_33524657
          Length = 965

 Score =  971 bits (502), Expect = 0.0
 Identities = 532/542 (98%), Gaps = 2/542 (0%)
 Strand = Plus / Minus

                                                                       
Query: 24  caatctatggatcccatataagagtcattttcaaagactttctctaaagtgaacaaatta 83
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965 caatctatgaatcccatataagagtcattttcaaagactttctctaaagtgaacaaatta 906

                                                                       
Query: 84  ataatatcaaggagggtaaacaggaacacacatgtaatgtcagattccagagtcaaagat 143
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 ataatatcaaggagggtaaacaggaacacacatgtaatgtcagattccagagtcaaagat 846

                                                                       
Query: 144 aagtatatctctgtgagtgccaagccagtctggtttatatattatgttcaaaagagcttg 203
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 aagtatatctctgtgagtgccaagccagtctggtttatatattatgttcaaaagagcttg 786

                                                                       
Query: 204 gactacatagtgagtctgtcaggaacactcaagaatctggtcaattatcagatagggtca 263
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 gactacatagtgagtctgtcaggaacactcaagaatctggtcaattatcagatagggtca 726

                                                                       
Query: 264 gaatctgtctctggattttctgaatccagacttggcaacctgtcttttaaaaagatatta 323
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 gaatctgtctctggaagttctgaatccagacttggcaacctgtcttttaaaaagatatta 666

                                                                       
Query: 324 aaagaaacagattcatagtaaaaagaggaaaaat-cagcattattcaatgtggtcccatt 382
           ||||| ||||||||||||| |||||||||||||  |||||||||||||||||||||||||
Sbjct: 665 aaagagacagattcatagtgaaaagaggaaaaaagcagcattattcaatgtggtcccatt 606

                                                                       
Query: 383 gaagggaggaactca-ctatccagtgaggtccgaagcctttcactgggattcctgacctg 441
           | ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ggagggaggaactgagctatccagtgaggtccgaagcctttcactgggattcctgacctg 546

                                                                       
Query: 442 agatcaaggcaaacaaacagagttgacagagctaagctgccaaggtgtcatcctgtctat 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 agatcaaggcaaacaaacagagttgacagagctaagctgccaaggtgtcatcctgtctat 486

                                                                       
Query: 502 cattattccatccttgtatgaccccactctgtcctgcatgggacttccaaggcagacttt 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cattattccatccttgtatgaccccactctgtcctgcatgggacttccaaggcagacttt 426

             
Query: 562 cc 563
           ||
Sbjct: 425 cc 424


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 965
Length adjustment: 10
Effective length of query: 553
Effective length of database: 955
Effective search space:   528115
Effective search space used:   528115
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)