BAC Information

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BAC

Clone NameMSMg01-470A10
Chromosome13 (Build37)
Map Location 99,503,874 - 99,504,117
singlet/doubletsinglet
Overlap geneFcho2
Upstream geneLOC100039740, Rgnef, LOC667703, Utp15, Ankra2, EG667718, Btf3, Foxd1, LOC100039827, LOC100039665, LOC100039854, LOC218501, Tmem174, Tmem171, LOC669675
Downstream geneTnpo1, EG432798, LOC100039771, 1700024P04Rik, LOC100039967, LOC100039797, Zfp366, Ptcd2, Mrps27, Mtap1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470A10.T7 (MSMg01no470_a10.b1)MSMg01-470A10.TJ (MSMg01no470_a10.g1)
ACCAG553124AG553125
length863743
length of high quality
(start - end)
---246 (72 - 317)
definitionCHROMAT_FILE: MSMg01no470_a10.b1 PHD_FILE: MSMg01no470_a10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:48 2005CHROMAT_FILE: MSMg01no470_a10.g1 PHD_FILE: MSMg01no470_a10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCAAAAATTGCCCCGCTAAACGACTCACATTTTCCCACCACCGCGGAA
TCACTCCGCTTCCACACACACACTTCTGTCTAACTCATAGATCTGCTTGC
TTCTAAGGTGTGTGTGTGTGCGTGAGAGTGTGTGTGTGTGTGTGTGTGTC
TCTTACCTTTTTCCTCACAACACCCACCCCACCCTCCCCACCACCACCAT
CACTCCTAACACCCAAAAAACCCACCCACCCCCATACATCCCCACAAACC
TTTTTTTTTTCCCCCCCCCCACCAACCAACCCTCCAAAAACCCTCTACAT
CATACCCCCACCACCCCCCCAACCCCTTAAATCCCTTTTCAACACCCCAA
CCCACAACCCCCCCAACCCAGTTTCTTTTTCCCCCCCCACATACAACCCA
CAACACCCCCCCCCACCCCCCAATTAACATAACACCCACCCACCCCCCAA
ATCACAAACACAAAACACACCCCAAACCAACCCCCCCCTATCCACCCAAA
CCCCCCTACCCCCACTCCACCACATCCCCAAATCACAATACACACCCCCC
TTATAACCACATTACCACCCCCACCACCCCCCCAAAATACAACCCATAAA
ACCCCAACCTTCCACCCCCATCAACAACCACCCCCCCCACACCCCCACCC
CTCCCAACCCCCCCCCCCCCAACACCCCCATACCACCAAACATCAACACC
ACAAACCACCACCCATAATAAACCCATCCCCCCACAACAATCCCCCACCC
CCCCACCATCCCTCCCCCTTCCCAAACAACACCCACCCACTTTCACACCA
AAAACCCCCCCCTACAAATCTCACCACACGCCACACCCACCCCCATTTAA
TACACCCCACCCC
CCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCAAAAATCCCAATTCCTTACCATGACCTACAACAGCCG
ATCTGGCCTGGGCCCTCTCTGGATGCATCCTCAACCTTTTCCTATGCAGT
GACCTACCTCCCTTCACCGTCTCCTGAGTTTTCCAAGCATGCCTTTACCC
AAGATCCTCTCCCAAGAGTGAATGGTTTGCTCCACTGTATTTTTCAAATA
TCTGCTTAAAATCTCCAAAAGCTTTTTTCCCTACTGTAATTTTCCACCTT
CATACGCCCCTCTTATTATTTTTTATCAATGCATACTCTATCTGCTTCTC
CGATGTTTTCTTTACTATAATGCAAGCTCAGGAGACCTCTGTTTTCTGAA
GTAGCTTTAGTACTTATCAAGAGACTTACTGGTGTGATAGTGCACACCTG
TAATACCAAGCAGTTGGAAGGCAGAGGCAAGTGGATCTCTGACTTCCAGG
CCAGCCAGGGGCACACAGAAAGACCCTGTCTCATGAATAACCAACACAAA
TGAAGGAATGAAGACCTCACCATTGTAGCCACGCACAAAAATAACGCCTT
ACACCTCATGAGCGCTCCAGTACCTTGTGAACGAATGTATGCTGAACACT
TTAGTGATACCGTTTCTAATGCACGCTCGCAAATATCTCGGAAAATACCA
TCGCTTGCCTCCCCTTCTAGTCGAACCCCAGTCCCTCTCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_a10.g1 MSMg01no470_a10.g1 CHROMAT_FILE:
MSMg01no470_a10.g1 PHD_FILE: MSMg01no470_a10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:48 2005
         (246 letters)



>mm_chr13_99503674_99504319
          Length = 646

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caattccttaccatgacctacaacagccgatctggcctgggccctctctggatgcatcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caattccttaccatgacctacaacagccgatctggcctgggccctctctggatgcatcct 260

                                                                       
Query: 61  caaccttttcctatgcagtgacctacctcccttcaccgtctcctgagttttccaagcatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaccttttcctatgcagtgacctacctcccttcaccgtctcctgagttttccaagcatg 320

                                                                       
Query: 121 cctttacccaagatcctctcccaagagtgaatggtttgctccactgtatttttcaaatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 cctttacccaagatcctctcccaagagtgaatggtttgctccactgtatttttcaaatag 380

                                                                       
Query: 181 ctgcttaaaatctccaaaagcttttttccctactgtaattttccaccttcatacgcccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgcttaaaatctccaaaagcttttttccctactgtaattttccaccttcatacgcccct 440

               
Query: 241 ctta 244
           ||||
Sbjct: 441 ctta 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)