BAC Information

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BAC

Clone NameMSMg01-470L01
Chromosome13 (Build37)
Map Location 118,117,389 - 118,117,638
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668276, Gm280, LOC100041169, Parp8, LOC668288, LOC623312, Emb
Downstream geneEG623365, LOC382807, Hcn1, LOC100041695, LOC674926
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470L01.T7 (MSMg01no470_l01.b1)MSMg01-470L01.TJ (MSMg01no470_l01.g1)
ACCAG553634AG553635
length830786
length of high quality
(start - end)
62 (172 - 233)249 (79 - 327)
definitionCHROMAT_FILE: MSMg01no470_l01.b1 PHD_FILE: MSMg01no470_l01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:41 2005CHROMAT_FILE: MSMg01no470_l01.g1 PHD_FILE: MSMg01no470_l01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCATATTGCGGCGCCAAACGACCACATATTTCCCACCGCGCGGAATC
TCACCTGATGCCACTAAAGGGCTAAGAACACCTGAAAAAAATGTTCAGCA
TCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGGTTCCACAT
CACACCAGTCAGAATGGGTGAAGATCAAAACTTCAGGTGACAGCAGATGC
TGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCCNNTTCGTCTNGCCCC
CCCCCCCCCTCGGCTCTCCCCTCCCTCCCTTTCTCCCCCCACTTCTCCCC
TCCTCACCCCCCCTTCCCCCCCCCCTCCCTCTCCCCTTCCCCTTTCCCTC
CCCTTCCCTCTTCTCCCTCCCTTTCCCCCCCTTTCCCCTCCTCTCCCCCC
CTCCCCCTTCCCCCCCCTCTCCCCTCCTCCCCCCCCCTCTCCTCTCTCTC
CCCCCCCTCCCCTCCCTCCTCCCCCGCCCTCTTCCCCTCCCCCTCCCTCT
CTTCCTCCCCTCCCCCTCCCCCCCCATCCGCCCCCCCCCCTCTTTCCCCA
CTCCCCCCTTCCCCCCCCCCCCTCTCCCCCCCCGCACCCCTCCATCTCCC
CTACACGCCCTCTCCCCCGCCCTGCATCCCCACTCCCCTCAACAGCCTCC
CTCTCCCCCCTTATCCCCCCCCCTCCCACATACCCCCCTCCCTCCTACCT
CCCTCCCCCCCTATACCCCTTCTCCCCCCCGTTCCTCCCTACCTCCCCCC
CCATTCCTTCCCCCCCCCCCTCCTCTCCCTCTCCTCCTCCCCTCCACCAT
TCTCCCCTCTCCTTCTCCCCTCCCCCTCTN
CCACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGCTCCTCCAGTGCCATGTC
TGCCTGGAAGTTTTCATCCTCCTGTGTTGATGGAAATAGACTGAAACTCT
GAGCCTGTTAAGCCAGCCCCAATTAAATGTTGTTCTTATAAGAGTTGCTG
TGGCCATGGCATTCTTGCCTTTTTTTTTTTCCAGGAGAAATCTTTAGTCA
TTCTTATTTCTATTTCTTTGCAAGTGACTGTCCTGTATCCCTGAAAAGAC
GTTTAAGGTTTTTCTTTTTATCATGTACTTTTATTGACTTTTTTTTACCC
TGCGAACGTTGGCTCTCTCTTCTCTATCCTCTGACATTGCGACTTGTTTG
CTGGTTTTTGGATATTCCCACACTACACCCATTCCTAGACTCTTTCATTA
TTTCCCACGTCTGAATAGACTTTCCTGTGGTTTCTTCCCTTATAAATCCC
CCTCTCCCTTACATTCTCTTTGATGTTCCCTGACCCTTCCTTTTCCGTAT
CTTCTCCCTCCCCCCCATCCTCCTTGCTTCCTCTTCTCATTCTCTTGCCT
CCTCCCTTCTCCAACCTTTCTTATTCTTTCGTCTCTTTTTCTCGTGTCCT
CCTTCTTTCCTCCCTTTCTTTATTGTAATTTTTCTCCTTCCACCACCTCT
TCTCTTCTTTTGCGTTTCTCTTTCTATTGTCTATTCCTATCGCCTTTTCA
TCTCCCTTCCTCCCTACTACATACTCATTCCTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_l01.g1 MSMg01no470_l01.g1 CHROMAT_FILE:
MSMg01no470_l01.g1 PHD_FILE: MSMg01no470_l01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:41 2005
         (249 letters)



>mm_chr13_118117058_118117707
          Length = 650

 Score =  414 bits (214), Expect = e-120
 Identities = 241/250 (96%), Gaps = 1/250 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagctcctccagtgccatgtctgcctggaagttttcatcctcctgtgttgatggaaata 60
           ||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||| 
Sbjct: 581 tcagctcctccagtgccatgtctgcttggaagttttcatcctcctgtcttgatgaaaatg 522

                                                                       
Query: 61  gactgaaactctgagcctgttaagccagccccaattaaatgttgttcttataagagttgc 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 521 gactgaaactctgagcctgttaaggcagccccaattaaatgttgttcttataagagttgc 462

                                                                       
Query: 121 tgtggccatggcattcttgcc-tttttttttttccaggagaaatctttagtcattcttat 179
           ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 461 tgtggccatggcattcttgccttttttttttttccaggagaaatctttagttattcttat 402

                                                                       
Query: 180 ttctatttctttgcaagtgactgtcctgtatccctgaaaagacgtttaaggtttttcttt 239
           ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 401 ttctatttctttgcaagtgactgtcctgtatccctgaaaagacttttaagatttttcttt 342

                     
Query: 240 ttatcatgta 249
           ||||||||||
Sbjct: 341 ttatcatgta 332


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 650
Length adjustment: 9
Effective length of query: 240
Effective length of database: 641
Effective search space:   153840
Effective search space used:   153840
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)