BAC Information

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BAC

Clone NameMSMg01-470O07
Chromosome13 (Build37)
Map Location 110,055,385 - 110,055,628
singlet/doubletsinglet
Overlap genePde4d, LOC100040968
Upstream geneElovl7, LOC668129, LOC100040524, Depdc1b, EG668144, LOC621663
Downstream geneLOC100040577, Rab3c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470O07.T7 (MSMg01no470_o07.b1)MSMg01-470O07.TJ (MSMg01no470_o07.g1)
ACCAG553788AG553789
length772793
length of high quality
(start - end)
175 (75 - 249)244 (81 - 324)
definitionCHROMAT_FILE: MSMg01no470_o07.b1 PHD_FILE: MSMg01no470_o07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:57 2005CHROMAT_FILE: MSMg01no470_o07.g1 PHD_FILE: MSMg01no470_o07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCGAGCCAGCGCGG
AATTCCACTTAGTAACTGAACAGCCCTAAAGAGCTTAGATTCTGGGCTTT
GCTTCTCCTAACCTGATGGCCTTGTGAAGACAGCTAGTTTATTTCACCCT
CAGTTTTCCTGTATAAGTGGAGACCATCACAGTGCTGAGTCTCCCTGGGA
GCTGCTGTGTAGATTAGAGAAGATGTGTATGCAACTGTGCCTGGGGCTTT
GTCAGCCTTCCATTCCTGCTGTTTACCTCTTCCTTGGAGCAAGCCAGAGC
CTCAGGGATTTGCATCAGTAAATGAAAAACAGCGCTTCCAGAAAACCCTT
GAACCCTATTTAGAACCAAATAAAGCAATTTCTCCCCAAACACAGGTCTC
TAACCTTGCCCTCCCAATCCCTTCTTACTTTCGATTTAGAATTAGGAGAC
AGGAGCTTTGTCCATTGTGGGTTTTTTTTTTCTTTCCAAAATGGATATTT
AAATGCTTGTTGTCTCCCAACCAATCCAACCACACAGCACTTCCTAACTC
ACCCCTCTACTCCCCACCCACCCTCCCCCCTTCCTCTTCTTCTTTCCTCC
CTCCCCCCCTCCCTCCCCACCAATCACCCCTCTTCCCCCATCCACCTCCA
CACCCTCCTTTTTTTCTAAAACTCTACTTGGTCTCCCTACCACCTATCCT
TTCCCCCCCCCCCCCCCCTTTTCCCGCCCTCTTTTCTTTTCTTTCCCCCC
TCCTTCTCTTCTCCCTTCCCTC
TTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATAGACGTGGCATTCCTGA
TGATGTCATAGGAAACTCCCTACTAAGATGAAATCAGAATCCTACGTACA
GTCAGGGAACGGAATATGGTATATGTTAAGTTCAATCTGTGAAACAGTGG
AGGCAAGCATGGATGTGTGAAAGTTGTAGCCCTCACACACAGGCAGTCCA
GGAAATTGCCGCTGATGTTTCAAGATACGATTATTACCAGCAATTGTTGA
GAGAGTGGGAAAAGTAAACTGCTACTTTTTTTCTAAATAGGGCAAGATTA
CTTTTCGTTGGGAAGCTCTCATAGAGCAAAGACTTAAGAGATGTGTGAAA
GGGAAGGGTACAAAGAGAGGATCCCCCTCCCCTCCCCCCCCCAGTAATAC
TCCTCTTCTTCGTCTCTTCTCCCATGGCTTAAAAAATAAATTACTCTCAC
TCACTAAATATTAAGACCAATTTAATTCACTCCACGGACAAACAAGTGAC
AATTTACTCTTCTATAAACATTCTCCTTCCCCTGAATGTGATGCCCACCA
CTTCTATTTATTAGCATTTTCTCGCTTGCGCATTTATACACTAGTAACCT
CTGCCTTATTCACCCCTTCCCTCCCCCCTTGTATTTGTTTCCCTCCGTCT
CCCCCTCCTTTTTTCCTCTCTTCCATATATCCTTATCCCCTTTCTTCTTT
TTCTCCTCTCTCTTTTATTCGTCTTACCCCTCTCTTTTTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_o07.g1 MSMg01no470_o07.g1 CHROMAT_FILE:
MSMg01no470_o07.g1 PHD_FILE: MSMg01no470_o07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:57 2005
         (244 letters)



>mm_chr13_110055185_110055828
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catagacgtggcattcctgatgatgtcataggaaactccctactaagatgaaatcagaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 catagacgtggcattcctgatgatgtcataggaaactccctactaagatgaaatcagaat 385

                                                                       
Query: 61  cctacgtacagtcagggaacggaatatggtatatgttaagttcaatctgtgaaacagtgg 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 384 cctacgtacagtcagggaacggaatatagtatatgttaagttcaatctgtgaaacagtgg 325

                                                                       
Query: 121 aggcaagcatggatgtgtgaaagttgtagccctcacacacaggcagtccaggaaattgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aggcaagcatggatgtgtgaaagttgtagccctcacacacaggcagtccaggaaattgcc 265

                                                                       
Query: 181 gctgatgtttcaagatacgattattaccagcaattgttgagagagtgggaaaagtaaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gctgatgtttcaagatacgattattaccagcaattgttgagagagtgggaaaagtaaact 205

               
Query: 241 gcta 244
           ||||
Sbjct: 204 gcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)