BAC Information

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BAC

Clone NameMSMg01-471P01
Chromosome13 (Build37)
Map Location 98,573,861 - 98,739,402
singlet/doubletdoublet
Overlap geneRgnef
Upstream geneLOC625662, 1700029F12Rik, EG620648, 5730427N09Rik, LOC100039663, Gfm2, Hexb, Enc1, LOC667676, LOC100039691, LOC100039704, EG328314, LOC100039526, LOC100039740
Downstream geneLOC667703, Utp15, Ankra2, EG667718, Btf3, Foxd1, LOC100039827, LOC100039665, LOC100039854, LOC218501, Tmem174, Tmem171, LOC669675, Fcho2, Tnpo1, EG432798
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471P01.T7 (MSMg01no471_p01.b1)MSMg01-471P01.TJ (MSMg01no471_p01.g1)
ACCAG554590AG554591
length732742
length of high quality
(start - end)		580 (73 - 652)659 (81 - 739)
definitionCHROMAT_FILE: MSMg01no471_p01.b1 PHD_FILE: MSMg01no471_p01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:23 2005CHROMAT_FILE: MSMg01no471_p01.g1 PHD_FILE: MSMg01no471_p01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,738,823 - 98,739,402)(98,573,861 - 98,574,519)
sequence
NAAAAATTGGTCCTACATGTCACTAATACGACTCACTTTTCAGAGAGGAT
CCGCGGAATTCTTCNTTGACACAAATAAGATAATGAATATGAAGCAGATA
ATCCTAGCAGATAAGAAACCACTTGTCCATTCTTGTAACCCAATGGTGCT
TTGACCTTAATTTATGAGTTTCTAATATTTCTTTTACTAGAAATTACAAG
AGAAATACAACAAGAACAAACCACAGAGCATCCTTGGAAGTAAGTGATGT
GGGAAATGACAAGAACTTAAACAAGTGCAATGTGCACCAGGCTTTTTCCA
CGGAAAAACGGCCTCCGGCTGTTTTTTTCTCATTGGTCCAGTTATTTCTT
CTTTATAACATATGCATGACATAAGTTTTAGCTATGTAAAGAAGTGAAGA
AGGATATAAACGTCTAGGTCAGCCCTAGAGGTTCTGCACTGTATACAGGG
CATGGTCTGTGTATCATACAGGGATTGTATGGAAACAGTGTAACCTGGTG
GTCTCAATTCTAATGCTTTTTTATTGGAGGATAGGCCATTGATTGACTAA
TTTTGAGGCAAACAGAGGCACTGTATTAAATGGATGTGATTTTTATGCTT
TCATAATAATAGCATGTACTCACATGCTAAAATCTCCTTAAGAGTTAAAA
TGTCTAGTGGGAAAGAAGCCCTTGGCTTTGGAATCTGTCCATTCTTGCTG
GTCCCTGTGGCCAGTGTTACGGAGACCCTATG

TTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAATAATGCTCCCTTTCAA
ATTAAACATAGCGTCAAAGGAATCAATTTGATTACTTTTGTGTAAACAGT
TTGGGTACTGTGGAAATTTTTCACCTGGTGGGTATGTTCTTTTCAAAAAC
TCCGATCGTTTTTTACATCACTTTATAAATCCTGATGTCTCCCAATAATA
CTTAAATTGGCTGACTTTTGTGAAAGGGTCTAGCCCCTTTAGCCTTCACT
AAGATCATATTGTGAAATTTCAATTGTGATGTGCTGGGGAGATGTTTAAA
CTTAAGAATGTTTCTAGAATGTTCAGTACCATATGATTCAATTTTCAGGG
CCCATGGAGCACAGTAAAGAGTTGATGCGATCCTCTTCAAGTGGAAACAA
TAAAGTGGAAATAAGAGCAGTACCTAAGACCTTCTACACTCGTGGCAATA
GAAATGCCAGCCTACACGGCTTTGCTTTTTTATGTTTGTTTTTAAAAGAG
AAGCATTTCAGGCATGGAGAGATGATGGCTAGGCTGTTAAGAGCCCTGGC
TTCTCTGGGTTCCCTTCCCAGCACCCATATAGCAGCTCACAACCATCTAT
AACTCCAGCTCAAGGGCATCTTGCTTGTTTCCATGGGCACCAGACACTCG
AGTGGTACTTAGACAGACATGAAGGCAAAACACTCATTCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_p01.b1 MSMg01no471_p01.b1 CHROMAT_FILE:
MSMg01no471_p01.b1 PHD_FILE: MSMg01no471_p01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:23 2005
         (580 letters)



>mm_chr13_98738623_98739602
          Length = 980

 Score = 1060 bits (548), Expect = 0.0
 Identities = 572/580 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaataagataatgaatatgaagcagataatcctagcagataagaaaccacttgtccattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 aaataagataatgaatatgaagcagataatcctagcagataagaaaccacttgtccattc 721

                                                                       
Query: 61  ttgtaacccaatggtgctttgaccttaatttatgagtttctaatatttcttttactagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 ttgtaacccaatggtgctttgaccttaatttatgagtttctaatatttcttttactagaa 661

                                                                       
Query: 121 attacaagagaaatacaacaagaacaaaccacagagcatccttggaagtaagtgatgtgg 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 attccaagagaaatacaacaagaacaaaccacagagcatccttggaagtaagtgatgtgg 601

                                                                       
Query: 181 gaaatgacaagaacttaaacaagtgcaatgtgcaccaggctttttccacggaaaaacggc 240
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 600 gaaatgacaagaacttaaacaagtgcaatgtgcaccaggctttttccgtggaaaaacggc 541

                                                                       
Query: 241 ctccggctgtttttttctcattggtccagttatttcttctttataacatatgcatgacat 300
           ||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ctctggctgctgttttctcattggtccagttatttcttctttataacatatgcatgacat 481

                                                                       
Query: 301 aagttttagctatgtaaagaagtgaagaaggatataaacgtctaggtcagccctagaggt 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 aaattttagctatgtaaagaagtgaagaaggatataaacgtctaggtcagccctagaggt 421

                                                                       
Query: 361 tctgcactgtatacagggcatggtctgtgtatcatacagggattgtatggaaacagtgta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tctgcactgtatacagggcatggtctgtgtatcatacagggattgtatggaaacagtgta 361

                                                                       
Query: 421 acctggtggtctcaattctaatgcttttttattggaggataggccattgattgactaatt 480
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 360 acctggtggtctcaattctaatgcttttttattggaggataggctattgattgactaatt 301

                                                                       
Query: 481 ttgaggcaaacagaggcactgtattaaatggatgtgatttttatgctttcataataatag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ttgaggcaaacagaggcactgtattaaatggatgtgatttttatgctttcataataatag 241

                                                   
Query: 541 catgtactcacatgctaaaatctccttaagagttaaaatg 580
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 catgtactcacatgctaaaatctccttaagagttaaaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no471_p01.g1 MSMg01no471_p01.g1 CHROMAT_FILE:
MSMg01no471_p01.g1 PHD_FILE: MSMg01no471_p01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:23 2005
         (659 letters)



>mm_chr13_98573661_98574719
          Length = 1059

 Score = 1243 bits (643), Expect = 0.0
 Identities = 655/659 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaataatgctccctttcaaattaaacatagcgtcaaaggaatcaatttgattacttttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaataatgctccctttcaaattaaacatagcgtcaaaggaatcaatttgattacttttg 260

                                                                       
Query: 61  tgtaaacagtttgggtactgtggaaatttttcacctggtgggtatgttcttttcaaaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtaaacagtttgggtactgtggaaatttttcacctggtgggtatgttcttttcaaaaac 320

                                                                       
Query: 121 tccgatcgttttttacatcactttataaatcctgatgtctcccaataatacttaaattgg 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccgatcattttttacatcactttataaatcctgatgtctcccaataatacttaaattgg 380

                                                                       
Query: 181 ctgacttttgtgaaagggtctagcccctttagccttcactaagatcatattgtgaaattt 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgacttttgtgaaaggttctagcccctttagccttcactaagatcatattgtgaaattt 440

                                                                       
Query: 241 caattgtgatgtgctggggagatgtttaaacttaagaatgtttctagaatgttcagtacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caattgtgatgtgctggggagatgtttaaacttaagaatgtttctagaatgttcagtacc 500

                                                                       
Query: 301 atatgattcaattttcagggcccatggagcacagtaaagagttgatgcgatcctcttcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atatgattcaattttcagggcccatggagcacagtaaagagttgatgcgatcctcttcaa 560

                                                                       
Query: 361 gtggaaacaataaagtggaaataagagcagtacctaagaccttctacactcgtggcaata 420
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 gtggaaacaataaagtggaaataagagcagtacccaagaccttctacactcgtggcaata 620

                                                                       
Query: 421 gaaatgccagcctacacggctttgcttttttatgtttgtttttaaaagagaagcatttca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaatgccagcctacacggctttgcttttttatgtttgtttttaaaagagaagcatttca 680

                                                                       
Query: 481 ggcatggagagatgatggctaggctgttaagagccctggcttctctgggttcccttccca 540
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 681 ggcatggagagatgatggctaggctattaagagccctggcttctctgggttcccttccca 740

                                                                       
Query: 541 gcacccatatagcagctcacaaccatctataactccagctcaagggcatcttgcttgttt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcacccatatagcagctcacaaccatctataactccagctcaagggcatcttgcttgttt 800

                                                                      
Query: 601 ccatgggcaccagacactcgagtggtacttagacagacatgaaggcaaaacactcattc 659
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ccatgggcaccagacactcgagtggtacttagacagacatgaaggcaaaacactcattc 859


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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