BAC Information

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BAC

Clone NameMSMg01-472A05
Chromosome13 (Build37)
Map Location 10,443,893 - 10,444,428
singlet/doubletsinglet
Overlap genenone
Upstream geneDip2c, LOC666986, Zmynd11, Chrm3, LOC100039604
Downstream geneLOC100039648
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472A05.T7 (MSMg01no472_a05.b1)MSMg01-472A05.TJ (MSMg01no472_a05.g1)
ACCAG554646AG554647
length747759
length of high quality
(start - end)
664 (73 - 736)533 (73 - 605)
definitionCHROMAT_FILE: MSMg01no472_a05.b1 PHD_FILE: MSMg01no472_a05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:29 2005CHROMAT_FILE: MSMg01no472_a05.g1 PHD_FILE: MSMg01no472_a05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTACAATATATCCAAACAAGAGATAATACTAATTGTTTTCAAATA
ATTTCACAAAATCAAAGGGTATGAATTCATGCAGATTTATTCTATGAAAC
CAGCATTAGGCCAATACCAAAACCAGTTGTAACTATAAAAAAATTAAATA
AAACTTCAAAACAAAATCTTCAGTGAACATTTATACGAAAATATTCAGCA
AAACACTGTTAAAAATTCTAATGTCACATAAAAAAGATCACTACCATGAT
CCACTGGACAGTCAGAAGTATTCAATGACAGCTGCCAATTTACAAAATGA
CACCCCAATTTAAAGCATGAAGAATAAAATACAAATGAATGTGTCCATGG
TTACAAAACAACAACAACAACAACAAAGATGTATCACAATGTGGGGCCTT
GAAAGGCAGCCTGTTTTGGTTGAATGAGGCTTGCTCCTGAGACCCAGTAG
GAAACTCTACAAGGAATGGAACAGTGAGCCACGTTCCCAGAGACAGGTGC
CTGACACCACAGAGCCCCCCACTCCATAATTCTGTGACTATCAGTCACCC
AGACAAAGCTACAAGCTCCTAGCAGTCTAGCTAGACTCCACCCTCACAGT
TACCTGACTATAGCCAGGTATGCTTCACCCCACCTGGCAACAGCAAGGCA
GCCCAGCTCACTATAAAAGGAGATGCGTGGTCCCTCCTCTCTTAAGC
CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTCAGTGCTTAATTGCTCTGCTATGAAG
GGAGGTAGTTGAACTGTGTGAGCTCTGTTCTGCTAATTTAAAGATTCTGA
GTCTATGATATGCACGATAGTTTAAATATAACTCTCCGCTTGTCCTGTCA
TATGTGACATTCCTTTGTAAGCTTACTCCCCCCCTTTATGTTCAAGATCA
ATGTCTCTTATATAGTCCTACAAGCATAATTACTGCTAAAATATTGATTG
TTTTCAAATGTAAATCTACAGCTCATCATTCTCTGAACTGTTTCTGGATT
ATAGATTGAACTCATCTAAATACAGCTCTACTCTTAGTAAGGGTGGAAAT
CCCCTCACTCCATCCAACCATGTAAAGGATAAAGGATGTGCTCTACACAT
CAGAAGGACTTTGGAGAGTTTTATAATTAAGAAAACTGCTTCTAGCAGTG
TTTCAAGGGCTCACTGGGTACCAAGACGGTCTTTGTGTACCTATCTCCTC
TTGAATCCTTCATAAGCACTATACATACATCTCCTTGTTCTTGAATAATT
CATAGTGAGTTAGGGTCCCTTTTCTAGTTGTGTATGCTTTCAGGGAAAGC
TACTACTTAAATTGCTATTTCCCAATTCCACATACAGTTTCCATTCTAAT
TATCCTTGGCATTATATTTTTTGGGTAAAGGCAAAAAAACTTTACTGTCT
CTATTTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_a05.g1 MSMg01no472_a05.g1 CHROMAT_FILE:
MSMg01no472_a05.g1 PHD_FILE: MSMg01no472_a05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:29 2005
         (533 letters)



>mm_chr13_10443693_10444628
          Length = 936

 Score =  998 bits (516), Expect = 0.0
 Identities = 530/536 (98%), Gaps = 3/536 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcagtgcttaattgctctgctatgaagggaggtagttgaactgtgtgagctctgttctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcagtgcttaattgctctgctatgaagggaggtagttgaactgtgtgagctctgttctg 260

                                                                       
Query: 61  ctaatttaaagattctgagtctatgatatgcacgatagtttaaatataactctccgcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaatttaaagattctgagtctatgatatgcacgatagtttaaatataactctccgcttg 320

                                                                       
Query: 121 tcctgtcatatgtgacattcctttgtaagcttactccccccc---tttatgttcaagatc 177
           ||||||||||||||||||||||||||||||| ||||||||||   |||||||||||||||
Sbjct: 321 tcctgtcatatgtgacattcctttgtaagctcactcccccccccctttatgttcaagatc 380

                                                                       
Query: 178 aatgtctcttatatagtcctacaagcataattactgctaaaatattgattgttttcaaat 237
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgtctcttatatagttctacaagcataattactgctaaaatattgattgttttcaaat 440

                                                                       
Query: 238 gtaaatctacagctcatcattctctgaactgtttctggattatagattgaactcatctaa 297
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 gtaaatctacagctcatcattctctaaactgtttctggattatagattgaactcatctaa 500

                                                                       
Query: 298 atacagctctactcttagtaagggtggaaatcccctcactccatccaaccatgtaaagga 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atacagctctactcttagtaagggtggaaatcccctcactccatccaaccatgtaaagga 560

                                                                       
Query: 358 taaaggatgtgctctacacatcagaaggactttggagagttttataattaagaaaactgc 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaaggatgtgctctacacatcagaaggactttggagagttttataattaagaaaactgc 620

                                                                       
Query: 418 ttctagcagtgtttcaagggctcactgggtaccaagacggtctttgtgtacctatctcct 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttctagcagtgtttcaagggctcactgggtaccaagacggtctttgtgtacctatctcct 680

                                                                   
Query: 478 cttgaatccttcataagcactatacatacatctccttgttcttgaataattcatag 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttgaatccttcataagcactatacatacatctccttgttcttgaataattcatag 736


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 936
Length adjustment: 10
Effective length of query: 523
Effective length of database: 926
Effective search space:   484298
Effective search space used:   484298
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)