BAC Information

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BAC

Clone NameMSMg01-472J12
Chromosome13 (Build37)
Map Location 97,122,459 - 97,286,825
singlet/doubletdoublet
Overlap geneLOC667582, 1200014M14Rik, 9330128J19Rik, Polk
Upstream geneAggf1, Crhbp, S100z, F2rl1, F2r, Iqgap2, F2rl2, Sv2c
Downstream geneCol4a3bp, Hmgcr, LOC100039456, LOC625662, 1700029F12Rik, EG620648, 5730427N09Rik, LOC100039663, Gfm2, Hexb, Enc1, LOC667676, LOC100039691, LOC100039704
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472J12.T7 (MSMg01no472_j12.b1)MSMg01-472J12.TJ (MSMg01no472_j12.g1)
ACCAG555090AG555091
length730732
length of high quality
(start - end)
244 (77 - 320)239 (79 - 317)
definitionCHROMAT_FILE: MSMg01no472_j12.b1 PHD_FILE: MSMg01no472_j12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:17 2005CHROMAT_FILE: MSMg01no472_j12.g1 PHD_FILE: MSMg01no472_j12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,286,582 - 97,286,825)(97,122,459 - 97,122,696)
sequence
TTCATCACTCTATXXXXXXXXXXXXXXXXXXXXXXXXATCCAAAAGAGGA
TCCGCGGAATTCATTTTTCCATGCACAACCAACTTTTGAAATCGGTGTGA
CTCCAGAGTCACCCTGTTAGCCGCTAAGTTACATACCTCAGCGATCCTTC
CCTTCCAAAGCTTTTCTTATGCCTTGCTCTCTCTGCAGGGGTCCAGATTT
TATGGAAATGAGCTCAAGAAGGAAAAGCAAGTCAATCAACGGATTGAAAA
TATGATGCAACAAAAAGCTCAAATTACCAGCCAGCAACTAAGGAAAGCTC
AATTACAGGTATTTATTCAGTTGTTAGGGGGAAGTTGATAGAATAGGAAT
TCATAACAGAAGTGCAGCACTGTCAAGTCATAACAGCAAACAGGGTCAGG
TGGAAGTACTCGTTACATTGCTACGCATGCGCACTACGCATGCGCACTAT
ACATGCGCATTCCGCAGGCAGGAAGGCTCAGGCCCTCTAAGCCTTGCTCT
GCACCTTTGCCTGTGCAGAAGAGAAAGTGGAACCTTAGGTGACTTGCCTG
GCTTCAAAGGACAGACAGTTTCGTTGCAGGACTGGGATTTGACCCACGCA
CAGCATATGTTGGTTTATTGTGTGCGCTTTGCAGCTAGGGAAGACTGTAA
GACATATATGGCCCCCTTTGAAGGAAGAGAAACTGGGCGGGGGACTCTAT
CAAAGCGACTGTATTTTAATAAAATAAGAA
NTTTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTGACACACGGGAATCTATTGAAAACCAGGACATCT
CTGACTAGGAGTAGCTAGCAAGCTTGCCTGTTAACCCAGCCATGGCTAAC
AGCTCATGCTTGCCTACCCTTCCTACTAGTTTTGCACCCTCATTTCTGTT
CGCACTGCCTCCTGGGTCCTCGTTCCTATGCGACACATCTCACACACTAT
TTGACTACACGGTGAGTTGTGGAACTGGTAGGAGGGACCAGCTGGAGGCC
AGGCAGTCTATGAGTGTTAATGTTTGACAGCTCCTTCCATCTTTGCTGCT
TGTCCTATTAGCCTCTCTCCCTGACTCACAGGAGGGTGTTTCAGCTGCAG
CTGGGGAGAGGGAGAAATTGAGAAGCAAAGTGATTCCATGTCAGAGGCCC
ACTCCATTCCAGTGCCTCGGCGGCCCACAGTGTGAACCCTGTAGAAAAGA
AGACAGGAGATCTTAACCTAGCATTTAGCTCTTGCTATCTGCCAGAATAG
AGGCTCACAATGCAAACTTGATAACCCTAGGAACTGAGAAATAGGATTAC
ACAAAATATTCAAATATATTCCGCACACCCAAGGAAATATCACCCACTTG
TTTTTGTCTTCTACCGATTGGTATAAACATCTTTCGCATCTATACTTGAA
ACAGAAAGTTATTATACTCAATATTATTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_j12.b1 MSMg01no472_j12.b1 CHROMAT_FILE:
MSMg01no472_j12.b1 PHD_FILE: MSMg01no472_j12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:17 2005
         (244 letters)



>mm_chr13_97286382_97287025
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaccaacttttgaaatcggtgtgactccagagtcaccctgttagccgctaagttacatac 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 444 aaccaacttttgaaatcggtgtgactccagagtcaccctgttagtcgctaagttacatac 385

                                                                       
Query: 61  ctcagcgatccttcccttccaaagcttttcttatgccttgctctctctgcaggggtccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctcagcgatccttcccttccaaagcttttcttatgccttgctctctctgcaggggtccag 325

                                                                       
Query: 121 attttatggaaatgagctcaagaaggaaaagcaagtcaatcaacggattgaaaatatgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 attttatggaaatgagctcaagaaggaaaagcaagtcaatcaacggattgaaaatatgat 265

                                                                       
Query: 181 gcaacaaaaagctcaaattaccagccagcaactaaggaaagctcaattacaggtatttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcaacaaaaagctcaaattaccagccagcaactaaggaaagctcaattacaggtatttat 205

               
Query: 241 tcag 244
           ||||
Sbjct: 204 tcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no472_j12.g1 MSMg01no472_j12.g1 CHROMAT_FILE:
MSMg01no472_j12.g1 PHD_FILE: MSMg01no472_j12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:17 2005
         (239 letters)



>mm_chr13_97122259_97122897
          Length = 639

 Score =  460 bits (238), Expect = e-134
 Identities = 238/238 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctattgaaaaccaggacatctctgactaggagtagctagcaagcttgcctgttaaccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctattgaaaaccaggacatctctgactaggagtagctagcaagcttgcctgttaaccca 260

                                                                       
Query: 61  gccatggctaacagctcatgcttgcctacccttcctactagttttgcaccctcatttctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccatggctaacagctcatgcttgcctacccttcctactagttttgcaccctcatttctg 320

                                                                       
Query: 121 ttcgcactgcctcctgggtcctcgttcctatgcgacacatctcacacactatttgactac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcgcactgcctcctgggtcctcgttcctatgcgacacatctcacacactatttgactac 380

                                                                     
Query: 181 acggtgagttgtggaactggtaggagggaccagctggaggccaggcagtctatgagtg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acggtgagttgtggaactggtaggagggaccagctggaggccaggcagtctatgagtg 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)