BAC Information

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BAC

Clone NameMSMg01-473G01
Chromosome13 (Build37)
Map Location 52,349,696 - 52,350,169
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667733, Ppia-ps13_636.1, LOC625524, Edg3, Shc3, Cks2, Secisbp2, Sema4d, Gadd45g
Downstream geneLOC100040321, Diras2, LOC100040572, Syk, Auh, Nfil3, Ror2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473G01.T7 (MSMg01no473_g01.b1)MSMg01-473G01.TJ (MSMg01no473_g01.g1)
ACCAG555691AG555692
length795786
length of high quality
(start - end)
427 (43 - 469)482 (74 - 555)
definitionCHROMAT_FILE: MSMg01no473_g01.b1 PHD_FILE: MSMg01no473_g01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:26 2005CHROMAT_FILE: MSMg01no473_g01.g1 PHD_FILE: MSMg01no473_g01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAATTAAATTACCTCCCCAGGCCCATGTGACTCTGACTTTATTTCCCT
GGTGACTGATGTTGTATTTATTGGCCATTTAGAGATCATTCTTCAGGAAG
TACCTGTTTATGATTTGGGCTCACCTCAGACTGGGTTTCCTTTATGACTA
TATATATATACATATATATATATATATATATATACACACACACACACACA
TATATATATACATTACTGTTCTAGTTAGGGTTTTATTGTTATGAACAGAC
ACTGTGACCAAGGCAATTTTTACAAAGGACAACATTTAATTGGGGCTGGC
TTACAGGTTCAGAGGTTCAGTCCATTATCATCAAAGCAAGAAAATGGCAG
CATCCAGGCAGTCATGGTGCAGGAAGAGCTGAGAGTTCTACATCTTCATC
TGAAGGCTGCTAGGAGAAGACTAACAAATCCCATCCCTACAATAACACAT
TTCCTTCCATAAGGCCACACCTCCTAGTAGTATCACTCCCTGAAGGCCAT
GCTTATTCTCACCATCATAATTACTTTTGTCCCTATACCCCCCAAATCTT
GATTGAGTGAACAAACAATATGTTCTGCAAATTTCTTTTTTAAGGGGACA
CCATTCCCCCTTTTCTAATGGTTAAATAATTTTTTTGGACTTTTTGTTGC
CGTCGTCCACCGCCCCCCTATTCAAGTACACTCTTCGTCTTATTTTCTTT
TTTTCTTGTTTTTCTCCCCCTTGTTCTCTCTTCGTATTTCTCTTT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATCTGAGAAAAAAAAAAAAGTGTAAGT
GACGGTCAGCAGATGGCGCTCTAAGAATGAAAACTGAGCTCAATGAGTCT
TGGTATGCTCCGTCGCCAGGATTTCTGTCTGGAGGGGAAGCCTCTGAAAG
ATGTGTATGCATCACAAAAGCCTGGAGTAGGAAAACACAGCACCCAGGGG
TCTGTCATGAATTCAGGGGAAGCCGGAAAGTCAAACATGCTCAGATTCAA
TGCTTAGTGATGCTCATGTTGACCATTTAAATCCAATCAGGGGCACGCAG
AGTCTTGCTATGTGGCTGCTGTTTAAATTAAGTAATTCCTAACACACTGT
GGCTTTTAATGATGCTACTATATATGCTTGAATTTGCGTTATTTGGTTCC
AAGTAACTTACCAAGTTCTGTTCCGGCTTATCTTCCATTTTTCTCCTGTG
GAAATCCAGCCTTTCTTCTCTTCCTTTGATTGATATATATATATATATAT
ATATATATATATATATATATATATATCTATATCCACGCTCCATTTCGTAT
GGTTGTGTTTTCTTTTTTTATAATCGCTATTTCTTTCTTCTTCTCCTGCT
TCTTTTTTTATTCTCTTTATTTTTTTTTTTCTTTCGGCTTGTGTCGTTTC
TTTTCTCCCGTNCTTCGCGTTTATGTTTTATTTTTTTGTCGTNTTCTTCC
CTTCTATAACCACTCTCTCCTCTCTTCTATTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_g01.g1 MSMg01no473_g01.g1 CHROMAT_FILE:
MSMg01no473_g01.g1 PHD_FILE: MSMg01no473_g01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:26 2005
         (482 letters)



>mm_chr13_52349496_52350371
          Length = 876

 Score =  841 bits (435), Expect = 0.0
 Identities = 468/485 (96%), Gaps = 14/485 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctgagaaaaaaaaaaaagtgtaagtgacggtcagcagatggcgctctaagaatgaaaa 60
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctgagaaaaaaaaaaat-tgtaagtgacggtcagcagatggcgctctaagaatgaaaa 259

                                                                       
Query: 61  ctgagctcaat---gagtcttggtatgctccgtcgccaggatttctgtctggaggggaag 117
           ||||    |||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ctga----aattatgagtcttggtatgctccgtcgccaggatttctgtctggaggggaag 315

                                                                       
Query: 118 cctctgaaagatgtgtatgcatcacaaaagcctggagtaggaaaacacagcacccagggg 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 cctctgaaagatgtgtatgcatcacaaaagcctggagtaggaaaacacagcacccagggg 375

                                                                       
Query: 178 tctgtcatgaattcaggggaagccggaaagtcaaacatgctcagattcaatgcttagtga 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tctgtcatgaattcaggggaagccggaaagtcaaacatgctcagattcaatgcttagtga 435

                                                                       
Query: 238 tgctcatgttgaccatttaaatccaatcaggggcacgcagagtcttgctatgtggctgct 297
           |||||||||||||||    |||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tgctcatgttgacca----aatccaatcaggggcacgcagagtcttgctatgtggctgct 491

                                                                       
Query: 298 gtttaaattaagtaattcctaacacactgtggcttttaatgatgctactatatatgcttg 357
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 492 gtttaaattaagtaattcctaacacactgtggcttttgatgatgctactatatatgcttg 551

                                                                       
Query: 358 aatttgcgttatttggttccaagtaacttaccaagttctgttccggcttatcttccattt 417
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 aatttgtgttatttggttccaagtaacttaccaagttctgttccggcttatcttccattt 611

                                                                       
Query: 418 ttctcctgtggaaatccagcctttcttctcttcctttgattgatatatatatatatatat 477
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 612 ttctcctgtggaaatccagcctttcttctcttcctttgat--atatatatatatatatat 669

                
Query: 478 atata 482
           |||||
Sbjct: 670 atata 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 876
Length adjustment: 10
Effective length of query: 472
Effective length of database: 866
Effective search space:   408752
Effective search space used:   408752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)