NNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTACAAGTTACACCGTATATGCAAACCAGTAGGCAAATGAGC
AGAGGTGTCCATGGACTTTCACATCAGAATGGATACAAGTAAGCCACTGA
CAGGAGGTGGCATTAGCAGTGTTTCTCTTACAGATGGTTACAAAATAGGA
CAAGAGTTTCTCCTGCCCATTAGGCAGAGCTCCAGACTTGGCTATCAGCC
CACTGACTGGAGATAAAAGACAGTTTAACCTTTTCAGAGGACAATTTAGC
AACATTCACACACTTTCAAAGGCCCCAGACCTTTGTCCTTGCAATTTTAT
TGCCTTTTCTACCTGTGGCTCTCCCTCTCCCCCTCCCCCTCCCTTTCCCT
CTCCCTCTCCCCCTCCCCCTTCCTTTCCCTCTTCTGTCTTCCTTATTAAC
CTTCTCCAACCCATGTTTCTCTCAGAGACCCCAGCATCTCCAAGGAGATG
GTAGAGGACTGTCTTGAAACCCTTGATGCAGTAGTGTCCTGGCAGGAGTG
GCTGCTGTGAAAACCTGTGGCGAATGGAACTGGGTTGGGCAGGCTCACGG
TCGCCATCATATCACTGAAAAAAAGGCCAGGGGAGAGGAGGGATTTTGTG
GCCTCCTGTAATGGGACCATTGATCCCCGAACCCTTGTAGGATTTTCTTC
TGGTCCCCGACCAAAGTAAAAAAGCCCGGGTC

NNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCACTCATTTCCTTAGTT
ATTGCACCAACTGCTACACTCATAAAACTCTCACCAGAATGAGTACCTAA
ACAGGAGCTGAAAAATGACAAGGACATGTCAAAGAGGACAGGTGAAAGAC
CCAGAGGCCCTAGCCCCACACACGGAACTACAGGAAACCGGGCAATACTG
AAGGCACAAGAGGGTCTTACTGGAGAGGAGCACAGATGGGTCATCTAGGG
CCAGGTTGCCAGCCCTGAAGGCAGGTATGTAGGTGGCATTGTACAGGCTG
AGTGAGCAGGTTGTTTGGGAGTATACATGTATGTGCATATACATATGAGC
ATATAGGAACAATTACTGAGGCCATGCTTGGAAGGAGAGCAGAGTGGTGT
CGGAGGACTTGGAGGGAAGGAAGGGAAGTAGGGAGAAGCAGGTAGAGAGC
ACCACTCATAATCTGGGGCTGGAAGATGATGGCACAGTGAGGGAAGTACT
ACGCCCATATGAGGGATAAGGTCAGATCTTTTAAAACCCCACAAAGCCCT
GTGTGTGTGTTGTGTTTTCTCTCTCTCTCTACCCCCCACTATTCTCACCT
CAATTCCCTTTTTTTCTTTTATTTGTATATATCTACTCGTCTCTCGTCTC
CCATCCTCTCTCTCTCATTTGATCCATTTCCCCTTCTTCTTCTTTT

Query= MSMg01no474_o20.b1 MSMg01no474_o20.b1 CHROMAT_FILE:
MSMg01no474_o20.b1 PHD_FILE: MSMg01no474_o20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:32 2005
         (472 letters)



>mm_chr13_56651770_56652641
          Length = 872

 Score =  716 bits (370), Expect = 0.0
 Identities = 454/502 (90%), Gaps = 35/502 (6%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttacaagttacaccgtatatgcaaaccagtaggcaaatgagcagaggtgtccat 64
           |||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttacaaggaacactgtatatgcaaaccagtaggcaaatgagcagaggtgtccat 264

                                                                       
Query: 65  ggactttcacatcagaatggatacaagtaagccactgacaggaggtggcattagcagtgt 124
           ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 265 ggactttcacaacagaatggatacaagtaagtcactgacaggaggtggcattagcagcgt 324

                                                                       
Query: 125 ttctcttacagatggttacaaaataggacaagagtttctcctgcccattaggcagagctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttctcttacagatggttacaaaataggacaagagtttctcctgcccattaggcagagctc 384

                                                                       
Query: 185 cagacttggctatcagcccactgactggagataaaagacagtttaaccttttcagaggac 244
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagacttggctatcagcacactgactggagataaaagacagtttaaccttttcagaggac 444

                                                                       
Query: 245 aatttagcaacattcacacactttcaaaggccccagacctttgtccttgcaattttattg 304
           |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatttagcaacactcacacattttcaaaggccccagacctttgtccttgcaattttattg 504

                                                                       
Query: 305 ccttttctacctgtgg------ctctccctctccccctccccctccctttccctctccc- 357
           |||| |||||||||||      |||||||||||||| |||||||||| ||||||||||| 
Sbjct: 505 ccttctctacctgtggtgctccctctccctctcccc-tccccctccccttccctctcccc 563

                                                                       
Query: 358 -----------------tctcccc---------ctcccccttcctt-tccctcttctgtc 390
                            |||||||         ||||||| ||| | |||||||||||||
Sbjct: 564 tcccccctccccttccctctcccctccctctccctcccccctccctgtccctcttctgtc 623

                                                                       
Query: 391 ttccttattaaccttctccaacccatgtttctctcagagaccccagcatctccaaggaga 450
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttccttattaaccttctccaacccatgtttctctcagagaccccagcatctccaaggaga 683

                                 
Query: 451 tggtagaggactgtcttgaaac 472
           ||||||||||||||||||||||
Sbjct: 684 tggtagaggactgtcttgaaac 705


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)