BAC Information

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BAC

Clone NameMSMg01-474P14
Chromosome13 (Build37)
Map Location 54,176,744 - 54,393,678
singlet/doubletdoublet
Overlap geneSfxn1, Hrh2
Upstream geneRor2, Sptlc1, LOC100040421, Msx2, EG432760, E130119H09Rik, Drd1a
Downstream geneLOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4, Nsd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474P14.T7 (MSMg01no474_p14.b1)MSMg01-474P14.TJ (MSMg01no474_p14.g1)
ACCAG556909AG556910
length713712
length of high quality
(start - end)
169 (325 - 493)241 (76 - 316)
definitionCHROMAT_FILE: MSMg01no474_p14.b1 PHD_FILE: MSMg01no474_p14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:36 2005CHROMAT_FILE: MSMg01no474_p14.g1 PHD_FILE: MSMg01no474_p14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,393,510 - 54,393,678)(54,176,744 - 54,176,980)
sequence
CCCTCTATAATTTGCGGAGNTAAAAGAANCACTATTTCAAAACGGGCGNG
GAANNCNGAAGTTACAAAAAACTGAGANGGGNGAGCTAANACATGGGGGG
ACAAACACAATGGCCTCTTACCCCAGAGTGTGATTTATCCCACGAGCCCT
TTCCTACGCAGCACGAATCCATCCACGACACTGTCTGCAAGGTACCACTT
CCCAGTACTGCTGCACTGGAGTTTCAGGGGACACCTGTAGCTAGCAGCTT
TTGCAGTGCTTGGTCAGGTAGGATGAGCCCTGCCCTGGGTACCTTCCTGT
TAGGCTGTCACCATCAGGTCATTTGCACACCACCTCAGAAAGTCCAGCAC
GGGACATTCCAGCCCCGAGAGACAGAATTTTCACCTTTATCCATTTCACA
CTTGACATGTTTTTATAACAAGTATTTTATATTTTATTCATGTATATGTG
GTTGTGTGGGCCACATAAGTAATGGGTGCTGGCGGAGGCTAGAAGTGGGC
ATCAGAGCCTCTGGAGTTGCATACAGTCATGAGATGCTCCATGTGGATAC
TGGGAACTGAACTCAGGTCCTCTGGAAAAGCCACAAGTGCTTCTAATGAC
TGAGCCAGCTCTACAGACTTTACTGTTGCCATTGCTGAATTGTTTTTTTG
ATACTCATTGCCGACAACGAAACCGAAAAAGTTAATCTTTGGGTGGTTTA
ATCGGTTGGCCTN
NNCCCGATGCAGTGGGAGGCCTGGCGGNCGCCTGGTGCTCACCTGGGGTG
AACTATAGAAGTGACAAAACAATTCTGTGAAAGCTACATTTAAAATATTG
CCTTGTTGCCTCTATTATGCACAAAAGAGAAAGAATGCTCTTGAGATAAA
CTGTCCCCTGGGGAAGAGTTTACCCCAGCCTGAGAACATCACAGGGTGGG
CAGGAAGGGAGCATTGGCCATGTAGCCGTATTTAGAGCATGGTCCAGTGT
TCACCCATTGAGCTGAAGGTTTGCTAGACCACCTGTGGAGTCACATGTCC
AGGCAGCCTCAGTCAGGTCNATTGTGTGAGAATCTCTAAAAGGCCTGTGT
GTGTTGTTTCTTTTTTTTTTTAAGATTGATTGATTGATTATATGTAAGTA
CACTGTAGCTGTCTTCAGATGCATCAGAAGAGGGCATCAGATCTCATTAT
GGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTTTAGACCTT
TGGAAGAGTAGTCAGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCG
TGTGTGTTTTTAAAAGCTCCCCTTCCACCCATGTATCCTGTGGTTTAGAG
CTTCCGTCTTTGCCAGTGCTGTTGTAGGAACAAACTGATTTTTTTTTTTT
TTTGCGCCTTTCGTTTTGAGCTTTCCCGGGGCTACTGAATCCTCCCTTCC
CTCTATAACTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_p14.b1 MSMg01no474_p14.b1 CHROMAT_FILE:
MSMg01no474_p14.b1 PHD_FILE: MSMg01no474_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:36 2005
         (169 letters)



>mm_chr13_54393310_54393878
          Length = 569

 Score =  327 bits (169), Expect = 2e-94
 Identities = 169/169 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcacaccacctcagaaagtccagcacgggacattccagccccgagagacagaattttcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gcacaccacctcagaaagtccagcacgggacattccagccccgagagacagaattttcac 310

                                                                       
Query: 61  ctttatccatttcacacttgacatgtttttataacaagtattttatattttattcatgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ctttatccatttcacacttgacatgtttttataacaagtattttatattttattcatgta 250

                                                            
Query: 121 tatgtggttgtgtgggccacataagtaatgggtgctggcggaggctaga 169
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tatgtggttgtgtgggccacataagtaatgggtgctggcggaggctaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no474_p14.g1 MSMg01no474_p14.g1 CHROMAT_FILE:
MSMg01no474_p14.g1 PHD_FILE: MSMg01no474_p14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:36 2005
         (241 letters)



>mm_chr13_54176544_54177184
          Length = 641

 Score =  389 bits (201), Expect = e-113
 Identities = 228/237 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgaaagctacatttaaaatattgccttgttgcctctattatgcacaaaagagaaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||  || |||||||| ||||
Sbjct: 201 tgtgaaagctacatttaaaatattgccttgttgcctctattaaacataaaagagagagaa 260

                                                                       
Query: 61  tgctcttgagataaactgtcccctggggaagagtttaccccagcctgagaacatcacagg 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctcttgagaaaaactgtcccctggggaagagtttaccccagcctgagaacatcacagg 320

                                                                       
Query: 121 gtgggcaggaagggagcattggccatgtagccgtatttagagcatggtccagtgttcacc 180
           ||||||||||||||| |||||||||||||||| |||||||||||||||||||||  ||||
Sbjct: 321 gtgggcaggaagggaacattggccatgtagccatatttagagcatggtccagtgcccacc 380

                                                                    
Query: 181 cattgagctgaaggtttgctagaccacctgtggagtcacatgtccaggcagcctcag 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattgagctgaaggtttgctagaccacctgtggagtcacatgtccaggcagcctcag 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)