BAC Information

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BAC

Clone NameMSMg01-474P18
Chromosome13 (Build37)
Map Location 70,199,899 - 70,200,121
singlet/doubletsinglet
Overlap geneLOC100042291
Upstream geneLOC218332, Pols, A530095I07Rik, Srd5a1, Nsun2, LOC100042260, 3110006E14Rik, 4930547H16Rik, Med10, EG620143
Downstream gene4930520P13Rik, EG633042, BC018507, EG620473, Adamts16, 8030423J24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474P18.T7 (MSMg01no474_p18.b1)MSMg01-474P18.TJ (MSMg01no474_p18.g1)
ACCAG556917AG556918
length733754
length of high quality
(start - end)
549 (68 - 616)226 (81 - 306)
definitionCHROMAT_FILE: MSMg01no474_p18.b1 PHD_FILE: MSMg01no474_p18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:37 2005CHROMAT_FILE: MSMg01no474_p18.g1 PHD_FILE: MSMg01no474_p18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCTTAATTTGCGGCGCTAAACGACTCCTATTTCGAGACATCCGCGGAAT
TCTCACCTTTGCAAATCGAATGACCGAGAAGCACCTGAAAAAATATCCAA
CATCCTTAATCATCAGGGAAATGCAAATCAAAGCAACCCTGAGATTCCAC
CTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGTTG
CTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATT
GCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCAGAAAA
TTGGACATAGTATTTTTTGAGGATCCTGCAATACCTCTCCTGGGCATATA
TCCAGAAGATGTCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCA
TAGTAGTCGTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCCC
TCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGAAGTA
CTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGA
TAGATCTGGAGGGTATCATCCTGAGTGAGGTAATCTAATCACAAAAGAAC
TCACATGATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTATA
ATACCCAAGATAGAAGTTGCCAAACACATGGAACTCTAGAAAAATGAAGA
CCCAAGGGCGGGCCCTTTGTCCCTTCTTAAAAT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCTCAGTGGTCACCAAAAAA
AGGGATTTTACATGGGACGTTAGGGTATGTCTCAGGGCAGTGAGGCCCAC
AGCTGGGGATGAAGCATTGAAGGTGGGGGTACTATTTATTATGAAGATGT
ATATATGTATGTATGTGTATATATATAAAACCTGAAGTTTGTCTTTCCTA
TTTTTTTGAGATAATTGAGGGGAACATGGGTCTCAGAGGACCTGTGAGGG
TGACGCAAGGACTTTCCGTCGTTTAGCAGCCCGNGGACACAGGGACAGCT
CTTATTTTTCCCCCTCACTCTCTGTCCCATGTGGTGAATACCATTACTGG
TCTGTTACAGAAGCCTCTCCCCAGTGCCGTAGCACCCACGTGATACCCTT
GTGATTCTCCCTGATGACAAGACAGAGCCTACACCCCGTCTATCCTTGTC
TCGCTCTTACCATCTGCTTGCTTCTCCTTCTCTTCTTTCTCTCTCGGAGC
TCACCCTACGCTTGGCTTTTCTTGCGCCTAACTTCAACCGCTCCCAACTC
CCACACCTCTCTCTTCCCGTCCTCACCTCTCTCACCGCCGGTATCCGCCA
TTTTTTTTTTTTTTTAACCGCCCGATCCCTCACCCTACCCTTACCCCTCT
CCCAATTCACTTCCCTACATTTATATTCTCTTTACTTCCTTCTCCACTTT
TCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_p18.g1 MSMg01no474_p18.g1 CHROMAT_FILE:
MSMg01no474_p18.g1 PHD_FILE: MSMg01no474_p18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:37 2005
         (226 letters)



>mm_chr13_70199699_70200324
          Length = 626

 Score =  400 bits (207), Expect = e-116
 Identities = 219/223 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctcagtggtcaccaaaaaaagggattttacatgggacgttagggtatgtctcagggcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctcagtggtcaccaaaaaaagggattttacatgggacgttagggtatgtctcagggcag 260

                                                                       
Query: 61  tgaggcccacagctggggatgaagcattgaaggtgggggtactatttattatgaagatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaggcccacagctggggatgaagcattgaaggtgggggtactatttattatgaagatgt 320

                                                                       
Query: 121 atatatgtatgtatgtgtatatatataaaacctgaagtttgtctttcctatttttttgag 180
           |||||||||||||||||||||||||||||||||||||||||||||||| ||   ||||||
Sbjct: 321 atatatgtatgtatgtgtatatatataaaacctgaagtttgtctttccaatagctttgag 380

                                                      
Query: 181 ataattgaggggaacatgggtctcagaggacctgtgagggtga 223
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataattgaggggaacatgggtctcagaggacctgtgagggtga 423


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space:   133889
Effective search space used:   133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)