BAC Information

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BAC

Clone NameMSMg01-475D20
Chromosome13 (Build37)
Map Location 79,788,073 - 79,788,431
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666883
Downstream geneLOC666925, LOC382780, EG666933
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475D20.T7 (MSMg01no475_d20.b1)MSMg01-475D20.TJ (MSMg01no475_d20.g1)
ACCAG557112AG557113
length784765
length of high quality
(start - end)
453 (61 - 513)367 (75 - 441)
definitionCHROMAT_FILE: MSMg01no475_d20.b1 PHD_FILE: MSMg01no475_d20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:57 2005CHROMAT_FILE: MSMg01no475_d20.g1 PHD_FILE: MSMg01no475_d20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGGCA
GGATTGCCCACTAACCATAATCTCTTAGCCAACCCTGACTTACATATATA
TGTATATGTATTTCAGGTAGTATACAAGCTAAACTAGGACATAAGTCATG
AGTAGAATTCTAATCCTTTTAAATTAGATAGATGGTAGAGTGTCTTATCT
AAATTGACAAATTGACAGAATGCATGTCATTTGTACTTCATACTATACAT
TTACTTCTCATGATTTTTTTCAATCATAACTAGAAGAAGAGGTTATCATG
ATTATTATCAATCATATCTGGAAGAAGAGGGTTTTTTATTATTGGACAGA
AAAGTGAGATATAGTGGAATTTTCTCCTAATTAATTGATTGGATAATACA
GATGACAAGAACATTCTGGGTCCAAGAAAGGAAGGGGGAACTAAGGAGGA
AGGTACACCCTTTTGGAAGGAGAGAACTGAGTTCTTTGTATAGCCCTCAT
CCAAATGCAGGATTGGTAAAGATCTTTCCACACGTGGTTGCCTTTTTTGT
TCAATTGACAGTGTCCTTTGCTTACAGAAACTGTGGAATTTTATGAAGTC
CCATTTGTCGAATTCTTGATCTTCAAGCATATTCCCTAAGTGTTTCCGCT
CGCGCAATTTTTTCCCCTGTGGTCTGGTGTCTTGAGATACCTCCTCTCTA
CTTCCCTTTCTATCATAAGTTTTCCGTTCTTTCGTCTTTCTATATGACCT
TCTTCCTGTTATCCACCTCGCACCTTTCTTCTTN
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGAGAAAGACCACAAACCGCCCTGAC
CTTGCTAGGATTCCCTGTGACATTAGTAGATGTGATGTTAATTGCTGACC
CATAAGTTCAAAATGTACTACTGCTTTGTTGACCAAATCATAATAACCCA
CCATGGGGGCAAGCAATGTGAGTCACTAGGCCAGAGGTAGTCACTATGCA
AACCAACCAATGTCTGAAATGATACTTGCTATACCAATGAGAACCCTGTT
ACCCAAAAGTTCCCCTTACAAAGGTATAAAAAGTGTGTTCTTTCTTTGTT
TAGGGTCTCTCCTCTGGCCTGCATGCTGAGAGGGGAGACCCCAACATGTT
GGAGCAACATGCAGTTTGCAGTGATGGCAGTCTCTGTGGTCTTTGTGACT
GACGCTCTTTCAACGAACTCCCACACTAGGCCTCTACTACCCAGTTAATT
AGCCCTATCATGCCACCTGAATACAAAACCAATTACATTCCTACGATGGC
ATCTATTCACTTATTCTCATCTTCCTCTTGTCCTTTTTCCCCCCCCCTTT
CCATCATTTCATCCCCCTTCCCTTCCCTAATTCTTTTTTTCCTCCCTACC
CTCCTCCTTTCACTCCTCTTTTCCCCTTTTCCTTCTCTTTTTCACTCCCC
CTTTCCTTTTTCTCCTCCTCCCCCTTTTTTTTCTCTTTCCCGCCCTTTTC
CTCCCCCTCCCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_d20.b1 MSMg01no475_d20.b1 CHROMAT_FILE:
MSMg01no475_d20.b1 PHD_FILE: MSMg01no475_d20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:57 2005
         (453 letters)



>mm_chr13_79787579_79788431
          Length = 853

 Score =  648 bits (335), Expect = 0.0
 Identities = 353/359 (98%)
 Strand = Plus / Minus

                                                                       
Query: 95  gaattctaatccttttaaattagatagatggtagagtgtcttatctaaattgacaaattg 154
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 853 gaattctaatccttttaaattaaatagatggtagagtgtcttatctaaattgacaaattg 794

                                                                       
Query: 155 acagaatgcatgtcatttgtacttcatactatacatttacttctcatgatttttttcaat 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 acagaatgcatgtcatttgtacttcatactatacatttacttctcatgatttttttcaat 734

                                                                       
Query: 215 cataactagaagaagaggttatcatgattattatcaatcatatctggaagaagagggttt 274
           |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 733 cataactagaagaagaagttatcatgattattatcaatcataactggaagaagagggttt 674

                                                                       
Query: 275 tttattattggacagaaaagtgagatatagtggaattttctcctaattaattgattggat 334
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tttattattgaacagaaaagtgagatatagtggaattttctcctaattaattgattggat 614

                                                                       
Query: 335 aatacagatgacaagaacattctgggtccaagaaaggaagggggaactaaggaggaaggt 394
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 aatacagatgacaagaacattctgggtccaagaaaggaagggggaactaaggaggaaggt 554

                                                                      
Query: 395 acacccttttggaaggagagaactgagttctttgtatagccctcatccaaatgcaggat 453
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 553 acacccttttggaaggagagagctgagttctttgtatagccctcatccaaatgtaggat 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)