Query= MSMg01no475_f05.b1 MSMg01no475_f05.b1 CHROMAT_FILE:
MSMg01no475_f05.b1 PHD_FILE: MSMg01no475_f05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:04 2005
(243 letters)
>mm_chr13_97184697_97185340
Length = 644
Score = 426 bits (220), Expect = e-124
Identities = 238/244 (97%), Gaps = 1/244 (0%)
Strand = Plus / Minus
Query: 1 agaaactttcttcccttctagccttatgaatatttacagatgttgtttgcttccctccgt 60
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 444 agaaactttcttcccttttagccttatgaatatttacagatgttgtttgtttccctccgt 385
Query: 61 gtttaattccagagcctgagggatgaagg-ccatacagcgaaggcagggaagctctgctt 119
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||
Sbjct: 384 gtttaattccagagcctgagggatgaaggcccatacagcgaaggcaggaaagctctggtt 325
Query: 120 agaaatgtcactgctactcttggtctttatttaaaagttaaaagaccttctattagtttt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agaaatgtcactgctactcttggtctttatttaaaagttaaaagaccttctattagtttt 265
Query: 180 attaatgaaagtaaagtcccttccaaagctctatgtaaattactgcccagcaacaatgga 239
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agtaatgaaagtaaagtcccttccaaagctctatgtaaattactgcccagcaacaatgga 205
Query: 240 aatg 243
||||
Sbjct: 204 aatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 644
Length adjustment: 9
Effective length of query: 234
Effective length of database: 635
Effective search space: 148590
Effective search space used: 148590
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no475_f05.g1 MSMg01no475_f05.g1 CHROMAT_FILE:
MSMg01no475_f05.g1 PHD_FILE: MSMg01no475_f05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:04 2005
(273 letters)
>mm_chr13_97029371_97030043
Length = 673
Score = 489 bits (253), Expect = e-143
Identities = 269/275 (97%), Gaps = 2/275 (0%)
Strand = Plus / Plus
Query: 1 aatcatctctttgcaggatgctgcaactacgtgccacagaagaatgtgagctcttttgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatcatctctttgcaggatgctgcaactacgtgccacagaagaatgtgagctcttttgag 260
Query: 61 atgccagaaaattagactgatagcttttgtattctcccagaataacgtgaggaatcatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgccagaaaattagactgatagcttttgtattctcccagaataacgtgaggaatcatga 320
Query: 121 aagatttctgcttgcattagagacatcaacaggtatcttagagaggcaaggctgatgtgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 aagatttctgcttgcattagagacatcaacaggtatcttagagaggcaaggatgatgtgc 380
Query: 181 ttgggagagatggcagagggatggtcccttattttcctt--tttttttattagatatttt 238
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 ttgggagagatggcagagggatggtcccttattttccttcttttttttattagatatttt 440
Query: 239 ctttatttacatttcaagtgctatcccctttcttg 273
||||| |||||||||||||| |||| |||||||||
Sbjct: 441 ctttacttacatttcaagtgttatctcctttcttg 475
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space: 175296
Effective search space used: 175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
