Query= MSMg01no475_g01.b1 MSMg01no475_g01.b1 CHROMAT_FILE:
MSMg01no475_g01.b1 PHD_FILE: MSMg01no475_g01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:08 2005
(275 letters)
>mm_chr13_103116349_103117023
Length = 675
Score = 484 bits (250), Expect = e-141
Identities = 265/274 (96%), Gaps = 8/274 (2%)
Strand = Plus / Plus
Query: 4 ggaattctatagg----tttcccccccatttcagaacattgaatgagcttcatgagtttc 59
||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctataggggggt----cccccatttcagaacattgaatgagcttcatgagtttc 259
Query: 60 ctttgtgctgagagctgtacccatgtggatgctcccagcctcctaaaattaattggatac 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ctttgtgctgagagctgtacccatgtggatgctcccagcctcctaaaattaattggatac 319
Query: 120 taggactgctccagccagctcacattttggaatataatgctcatagagctcaatgcttct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 taggactgctccagccagctcacattttggaatataatgctcatagagctcaatgcttct 379
Query: 180 ctgctattcaaaataatccagtgtgagagtaaagtaaacaacacaaagccttaaccctgt 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttgctattcaaaataatccagtgtgagagtaaagtaaacaacacaaagccttaaccctgt 439
Query: 240 actccatggcatcctgggtgtgcttaacataggg 273
||||||||||||||||||||||||||||||||||
Sbjct: 440 actccatggcatcctgggtgtgcttaacataggg 473
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space: 177156
Effective search space used: 177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no475_g01.g1 MSMg01no475_g01.g1 CHROMAT_FILE:
MSMg01no475_g01.g1 PHD_FILE: MSMg01no475_g01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:08 2005
(421 letters)
>mm_chr13_103303621_103304441
Length = 821
Score = 681 bits (352), Expect = 0.0
Identities = 361/364 (99%)
Strand = Plus / Minus
Query: 58 gaatgacttacaagggattggagatggagagttggtagagtgcttgcctacactgcaaac 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 gaatgacttacaagggattggagatggagagttggtagagtgcttgcctacactgcaaac 762
Query: 118 acccctacataaacacaagactggtggctcgtccaggtaatccctgcatttgagagatag 177
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 761 acccctgcataaacacaagactggtggttcgtccaggtaatccctgcatttgagagatag 702
Query: 178 aagtgagaggatcagaagctcaacaattgtcaccagctacatgaggcgcccgaggccagc 237
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 701 aagtgagaggatcagaagctcaacaattgtcaccagctacatgaggcgcctgaggccagc 642
Query: 238 ctggaccacaggagaccctgaataaactaaagaatgtaaaatacaaccgaagtgatggaa 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ctggaccacaggagaccctgaataaactaaagaatgtaaaatacaaccgaagtgatggaa 582
Query: 298 actttggatcagatatttgaatttattcttcctaatgtgttggcttttaactttctgtat 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 actttggatcagatatttgaatttattcttcctaatgtgttggcttttaactttctgtat 522
Query: 358 tctgtgattcaaatggtctgctgtctccttccttccccaccccacccccacttcccatta 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tctgtgattcaaatggtctgctgtctccttccttccccaccccacccccacttcccatta 462
Query: 418 ttca 421
||||
Sbjct: 461 ttca 458
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space: 334544
Effective search space used: 334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
