BAC Information

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BAC

Clone NameMSMg01-476E20
Chromosome13 (Build37)
Map Location 79,904,031 - 79,904,280
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666883
Downstream geneLOC666925, LOC382780, EG666933
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476E20.T7 (MSMg01no476_e20.b1)MSMg01-476E20.TJ (MSMg01no476_e20.g1)
ACCAG557926AG557927
length723794
length of high quality
(start - end)
174 (77 - 250)248 (66 - 313)
definitionCHROMAT_FILE: MSMg01no476_e20.b1 PHD_FILE: MSMg01no476_e20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:22 2005CHROMAT_FILE: MSMg01no476_e20.g1 PHD_FILE: MSMg01no476_e20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAATTAGTCCTCATGTCACNAAANGACTCACTATTCGAAGAGGATCCGC
GGAATTCCCATATAGCAACATAATAAAGACTACCTAATTCTTTCTATGAA
TCCTCAGCTACATTGATATTTAAACCACAAGAAGACCCAACAAAGAAAAA
GAACTTCAGAATGATTTCCCTCATAAATTTGGATGAAAAATCTTCAATAA
AATCCTAGCAAACTAAATCCAAGAACATATCAAAATGATCAATCAGCTTG
TTCAAGTAAATGTCATCCCCTCAGATGCCAGGAATTGCTTCCACTAATAT
AGAAGTCCTTTTTAACCCAACCCCTTTTTTTTTTTCCAGGAAAAATCCCC
GGAATCTTCTCTTTAAATGCTGAAAAATTATCTTCCCCACAATATACCAC
TCTCCTTTTTTTTTTAAAAAATCTTTGGGCAATTTGTTAAGGGAAGGGGC
TGTTTTCTCTCTTTAAAAATCCCCCCTTTTTTTGTGCGCAAAAAAAATAT
TTTCCTCCGCCCACCCTTTATATTTTTTTGTCTGTGCGGGGGCTTTTCTT
CCCAAATCTATTTTGCCTCTTTTGGCCTTTCTTTTCTGTGTTGCCTACCA
TTTCACCCTGCTGACCTTTTTTTTTTTCCCCCCTTTTTCCCCCCTTTCTT
TTTCCCCCTTTTTTTTTTCCTCCCTTTTTCCCCATTCTTTTTCCTCCTTT
CTCCCTTTCCCTTTCCCTACATN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTTCGCGCAATTCTTTGTATTAAATGAATTATCAGGAAAGGCAA
ATTTGCAAGAATAGAATGTAGGGATTTTTTTCTTTTTTTTCCAAAATCAA
GCAGCATTGTAATTTTTAGTACAGGGATAAATGCTTTTTTGCAAAACCCT
TGTCAATGAGCTGTCTAAAATACATCCTGCCCAATACGAACACATATGTA
AAAGCTAATCCATTTTAATACTTTGTAATGATAATAAGCTAGAGTGAACA
AGTAGCCTAGGGAATTTATTTTGTAGAGACCTTTAAACAGGAAGAGAATT
GCAAGTAATTGTACATTTTTTCACTAGGCAAATGACAACATTTACTATGA
CTTTGAACTTGCTCTGGCTGTCACTATTCTGGCAAACATTCTGCATATCA
ATAAGATAGTCATATTTCTTTCATGGAGATTAATATAGAAACTAACTTAT
ATACTCCTTATATGTAATGCGGCCGCTGCTATGTAAATAAGAAGCTCACT
CATTTTCTAGATGATATGTTGAATTTCTATTCCCAAATGTTCCCAACTTT
TACACCCCCCGATTCCACCGTCTCTTTCCCTTTGACGACATTTTCCAAAT
CCCCCCTTTCCCCCCTTCCCTGTATGCGACTTTTTCACCCGTCATTTCCA
TCCTGCCTCTACCTTAATTACTCTCCGTTACTATTTCCCCCCCTCCTTTT
CTCTTTTTTTCCCCCTCCCCCTCTTTTTTCCCCCTTCCCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_e20.g1 MSMg01no476_e20.g1 CHROMAT_FILE:
MSMg01no476_e20.g1 PHD_FILE: MSMg01no476_e20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:22 2005
         (248 letters)



>mm_chr13_79903831_79904480
          Length = 650

 Score =  453 bits (234), Expect = e-132
 Identities = 246/250 (98%), Gaps = 2/250 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctttgtattaaatgaattatcaggaaaggcaaatttgcaagaatagaatgta-ggga 59
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| 
Sbjct: 450 attctttgtattaaatgaattatcaggaaaggcaaatttgcaagaatagaatgtaggggt 391

                                                                       
Query: 60  tttttttc-ttttttttccaaaatcaagcagcattgtaatttttagtacagggataaatg 118
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tttttttctttttttttccaaaatcaagcagcattgtaatttttagtacagggataaatg 331

                                                                       
Query: 119 cttttttgcaaaacccttgtcaatgagctgtctaaaatacatcctgcccaatacgaacac 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 cttttttgcaaaacccttgtcaatgagctgtctaaaatacatcctgcccaatacgaacac 271

                                                                       
Query: 179 atatgtaaaagctaatccattttaatactttgtaatgataataagctagagtgaacaagt 238
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 atatggaaaagctaatccattttaatactttgtaatgataataagctagagtgaacaagt 211

                     
Query: 239 agcctaggga 248
           ||||||||||
Sbjct: 210 agcctaggga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 650
Length adjustment: 9
Effective length of query: 239
Effective length of database: 641
Effective search space:   153199
Effective search space used:   153199
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)