BAC Information

Click to search

BAC

Clone NameMSMg01-476L01
Chromosome13 (Build37)
Map Location 27,100,903 - 27,101,067
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666221, LOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957
Downstream genePrl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476L01.T7 (MSMg01no476_l01.b1)MSMg01-476L01.TJ (MSMg01no476_l01.g1)
ACCAG558221AG558222
length758753
length of high quality
(start - end)
454 (67 - 520)476 (77 - 552)
definitionCHROMAT_FILE: MSMg01no476_l01.b1 PHD_FILE: MSMg01no476_l01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:52 2005CHROMAT_FILE: MSMg01no476_l01.g1 PHD_FILE: MSMg01no476_l01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCAATATCCCCAAGATACATAATGGATAAAACATATGCCTAGGAT
CTAGCCAGATCCATGCAGGCTCTGTGATTGCTGCTTCAGTCTCTGTAAGC
CCTATTGTGCCCTACTTAACTGATTCTGTGGGCCATGTTCTCATGGTGTC
ATTCATTTCTGCTTCTTACTATTCTTCTTGCCAACTTCTGTGGAGATCCT
TGAGTTCTTCTAATGTTTGGCTGTGGGTTTCTGAATCTACTCCCACTAAC
TGGTGATAAAGCCTCTCTGTTTAGGATTGGGCTAGGTGCCTATTTATCTA
AGAGTATAGCATAATACAATTAGGAATAATTTTATTGACTTTTTATGAGA
GTTGCATCTGGTTCTATCTTAGGTGGATATCAGCTTAAAGTGTTCCCTGG
TAGAATTTTTGGTATTGCCTATATATACTATCATAACATCTGCACATTTT
GATACTTTAACTTCTTCCTTTCCAAATTGCATCCACTTGATCTTGCAGCT
TTCTTACTGCTCTAGTGACAACTTTATCGACCATATTTACTAGACATGTA
ATCTGCGTTAAGCCTTGCCCTTGTCTCTCGTTTTACCTGTTATTCCCTTT
CAGCTTCTCCTCTTTGTACTTGACCTTCCCCTTCATTCTCGCTTTTCCCT
TCCTTCACTTATTGCTCATTTCTTCTCTCCTTGTCCCCCCTCCTCTCTTC
CCGTTTCN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTTGTTAATTAGAATTTCCATAT
CTGTTGGGTATTTAGCAAAGGACCTTGACTCTTCTAGATGATCAACTTGG
AAAAATATATTCTTTGGTCTTGTATATCCTGAGGAATGTGAATGAACAGA
GGGCAGCCAGTGTCTTCAAGACACTGGTTTGAAGGCTTGTGGAATCTATT
GATTACACTAATGCTTGTGATGTCCTGAACAATTTGTAATTTGTCATTTC
CCTCTCTTGACCATTATATGTTTTATTCAGTCAGAGTTCTGTATTTAAAA
GTACACACAGAGTTTCACCATTTCATGATTCATATTAAAGCTGCTGGTCA
ATTCGGAGTTGTTTTTATGTGCAGTGATAGAAAATAAAGTCACAGGAAAC
AAGTCATCTGACAGAAAAATTGGGAAAGTGTGTAATTTTTAGGAGACATG
CATAATGAAATACAGAAATAGGAGGGAGGAGAGTAAGATAACAATGAGGA
TGTTTTTTAAAAATTAAGAGGATCCATGACATTACCAATTACCTTTAAAA
AACTTACCATGCTCCATATTGTGTGCATAAAATATACCCCTTATGCCCTT
AACGACAATTTTTTTATGACTCCGTTACATAATTTCCACCTCAGGAATGA
CGAGTTCCTTTTTGAATTATTTTCTCCCCCCGCCCCCTTTTTCTTCTTTT
TAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_l01.g1 MSMg01no476_l01.g1 CHROMAT_FILE:
MSMg01no476_l01.g1 PHD_FILE: MSMg01no476_l01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:52 2005
         (476 letters)



>mm_chr13_27100538_27101413
          Length = 876

 Score =  304 bits (157), Expect = 1e-86
 Identities = 163/165 (98%)
 Strand = Plus / Minus

                                                                       
Query: 166 gaatctattgattacactaatgcttgtgatgtcctgaacaatttgtaatttgtcatttcc 225
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gaatctattgattacactaatgcttgtgatgtcctgaacaatttgtaatttgtcatttcc 471

                                                                       
Query: 226 ctctcttgaccattatatgttttattcagtcagagttctgtatttaaaagtacacacaga 285
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ctctcttgaccattatatgctttattcagtcagagttctgtatttaaaagtacacacaga 411

                                                        
Query: 286 gtttcaccatttcatgattcatattaaagctgctggtcaattcgg 330
           ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 410 gtttcaccatttcattattcatattaaagctgctggtcaattcgg 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)