BAC Information

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BAC

Clone NameMSMg01-476P02
Chromosome13 (Build37)
Map Location 36,616,477 - 36,616,936
singlet/doubletsinglet
Overlap geneFars2
Upstream geneCdyl, Rpp40, LOC100041568, Ppp1r3g, Lyrm4, LOC100042773, LOC100041590
Downstream geneLOC666758, Nrn1, F13a1, Ly86, LOC100042794, LOC100042800
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476P02.T7 (MSMg01no476_p02.b1)MSMg01-476P02.TJ (MSMg01no476_p02.g1)
ACCAG558413AG558414
length771764
length of high quality
(start - end)
426 (47 - 472)460 (77 - 536)
definitionCHROMAT_FILE: MSMg01no476_p02.b1 PHD_FILE: MSMg01no476_p02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:13 2005CHROMAT_FILE: MSMg01no476_p02.g1 PHD_FILE: MSMg01no476_p02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTCTTCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT
TTATGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC
CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT
CTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA
TTAGGTCCCATTTGTCAATTCTCGATTTTACATCACAAGCCATTGCTGTT
CTGTTCAGGAACTTTTCCCCTGTGTCCATATCTTCAAGGCTTTTCCCCAC
TTTATCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTGA
TCCATTTAGATTTGACCTTAGTACAAGGAGACAAGTATGGATCGATTTGC
ATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAAT
GCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGCCGAAGATCTAGC
GGTCTTAGGTGTGTCGCCCCCCTCCTTGCGCCTTCAATTCTATTTCCCTC
GGTCTCACTGGTCTGTCTTTATCCTGACTATTCTTTTCTCTTCCTTCATT
ACCCTTTTTGTACCACTTCTTTTTATGTCTCTCTTCGTCTCCTTCTTTTC
TCCCCTTTTTTCTTGCCGGCCGCGCGCCTTTTTTTCCCCCCCTTTTTTTT
GCTGTCTGCTCGTCTCTTTTG
CCATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGCTCTGTCCCCCATTT
TTAAATACGGTTATTTTATTCACTGGATTCTAACTTCTTGAGTTCTTTGT
ATATATTGGATAATAGCCCTCTATCGCATTTAGGATTGGTAAAGATCTTT
TCCCAATCTGTTGGTTGCCTTGTTGTCTTATTGACAATGCCCTTTGCCTT
ACAGAAGCTTTGCAATTTTATGAGGTCCCATTTGTCAGTTCTTGATCTTA
GAGCATAAGGTATTGGTGTTCTGTTTAATAAATTTTCCCCTGTGCCCATG
TTCTCGAGGCTCCAAGTTTTGTTGTGGGAACAGCCTTATGAAAGCTGCAG
GTACTTTGAAATAGAGATACCATTGAGACATTGGCCACTAACTAATGTCA
AATACCATCCTGTGCAGGGTAAGAGCATTTGCAGGCACCTGGACTCCTTA
TCTGTGACCTAATACTTGAGTGGATTTTAAGCCTGTGTGAGCCTGGCTTT
CTTCTGGGGTGAAAGCCTGATAAGTATTTCAGTGAAGGCCCTGGGATCTG
ATCAGGGAAAGAGGTCACCCCTACTCAGAGCCCTGGCATGAGTGAGGTCC
TCATGTCCCTACCTTTAAGGCACTTTTACTGGCCCTTATGCTAATGAACT
GGTTAGTTAAAAGCCCACTATTCGGTATTACGTCCAGTCGCCCACCATTT
ATATTCCTTTGCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_p02.g1 MSMg01no476_p02.g1 CHROMAT_FILE:
MSMg01no476_p02.g1 PHD_FILE: MSMg01no476_p02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:13 2005
         (460 letters)



>mm_chr13_36616277_36617136
          Length = 860

 Score =  843 bits (436), Expect = 0.0
 Identities = 454/460 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgtttagctctgtcccccatttttaaatacggttattttattcactggattctaactt 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 tctgtttagctctgttccccatttttaaatacggttattttattcactggaatctaactt 260

                                                                       
Query: 61  cttgagttctttgtatatattggataatagccctctatcgcatttaggattggtaaagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgagttctttgtatatattggataatagccctctatcgcatttaggattggtaaagat 320

                                                                       
Query: 121 cttttcccaatctgttggttgccttgttgtcttattgacaatgccctttgccttacagaa 180
           ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 321 cttttcccaatctgttggttgcctttttgtcttattgacaatgtcctttgccttacagaa 380

                                                                       
Query: 181 gctttgcaattttatgaggtcccatttgtcagttcttgatcttagagcataaggtattgg 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 gctttgcaattttatgaggtcccatttgtcagttcttgattttagagcataaggtattgg 440

                                                                       
Query: 241 tgttctgtttaataaattttcccctgtgcccatgttctcgaggctccaagttttgttgtg 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 tgttctgtttaataaattttcccctgtgcccatgttctcaaggctccaagttttgttgtg 500

                                                                       
Query: 301 ggaacagccttatgaaagctgcaggtactttgaaatagagataccattgagacattggcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaacagccttatgaaagctgcaggtactttgaaatagagataccattgagacattggcc 560

                                                                       
Query: 361 actaactaatgtcaaataccatcctgtgcagggtaagagcatttgcaggcacctggactc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actaactaatgtcaaataccatcctgtgcagggtaagagcatttgcaggcacctggactc 620

                                                   
Query: 421 cttatctgtgacctaatacttgagtggattttaagcctgt 460
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttatctgtgacctaatacttgagtggattttaagcctgt 660


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)