Query= MSMg01no477_m03.b1 MSMg01no477_m03.b1 CHROMAT_FILE:
MSMg01no477_m03.b1 PHD_FILE: MSMg01no477_m03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:17 2005
(692 letters)
>mm_chr13_20602863_20603950
Length = 1088
Score = 1259 bits (651), Expect = 0.0
Identities = 678/689 (98%), Gaps = 4/689 (0%)
Strand = Plus / Minus
Query: 4 ggaattcctgggactacaaatgtatcctgtgccaacccattagcaatctggagcattttc 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 ggaattcctgggactagaaatgtatcctgtgccaacccattagcaatctggagcattttc 829
Query: 64 atgtacgtagtgagatatttcaaagacgagaccccagtctcagtgtaaaacctaggtttc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 atgtacgtagtgagatatttcaaagacgagaccccagtctcagtgtaaaacctaggtttc 769
Query: 124 atatgtaccttacacacacgggctgaaggtaattttatacagtatgtttagtaaaccagc 183
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 768 atatgtaccttacacacacgggctgaaggtaattttatacagtgtgtttagtaaaccagc 709
Query: 184 attttagttaagactcatcacttgaggtcagggtagaaattatacttgtgacatggaaat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 attttagttaagactcatcacttgaggtcagggtagaaattatacttgtgacatggaaat 649
Query: 244 gttttggaatttggaacgttttgagttttagttctcagactatggatgctcattctattc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 gttttggaatttggaacgttttgagttttagttctcagactatggatgctcattctattc 589
Query: 304 cagaatttactaagagatcatcttcaatttctcattatctgactcagtttcaataacatg 363
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 588 cagaatttactaagagatcatcttcaatttctcattatctgactcaatctcaataacatg 529
Query: 364 caatcaactattgactccccagtctaagcaatgctctgactccattctaagttttgatta 423
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 528 caatcaactattgactccccagtctaagcaatgcactgactccattctaagttttgatta 469
Query: 424 gacacttctatctcctgctcagatcgagactcctaacttcgtctcttttcagcaatcaag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gacacttctatctcctgctcagatcgagactcctaacttcgtctcttttcagcaatcaag 409
Query: 484 atcttttgtctagagtgccctctttctgaagtgcaaatatgaggccatctctcctgggct 543
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 atcttttgtctagagtgctctctttctgaagtgcaaatatgaggccatctctcctgggct 349
Query: 544 taacatttattttcctattgtccgttagagatgcatttctataaccctgggctgaagctt 603
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 taac----attttccttttgtccgttagagatgcatttctataaccctgggctgaagctt 293
Query: 604 cacctccacagccctttcctgggccctttccaggctgtggtgcaacccacttgtactctg 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 cacctccacagccctttcctgggccctttccaggctgtggtgcaacccacttgtactctg 233
Query: 664 cccagtgacctgaaggtgtggtcctctcc 692
|||||||||||||||||||||||||||||
Sbjct: 232 cccagtgacctgaaggtgtggtcctctcc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1088
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1078
Effective search space: 735196
Effective search space used: 735196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no477_m03.g1 MSMg01no477_m03.g1 CHROMAT_FILE:
MSMg01no477_m03.g1 PHD_FILE: MSMg01no477_m03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:17 2005
(619 letters)
>mm_chr13_20433819_20434836
Length = 1018
Score = 1096 bits (567), Expect = 0.0
Identities = 606/619 (97%), Gaps = 1/619 (0%)
Strand = Plus / Plus
Query: 1 ttcccacccatctacactggtacagaggcaggctatgccagcttctttgaaattcccatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcccacccatctacactggtacagaggcaggctatgccagcttctttgaaattcccatc 260
Query: 61 catatagactggtacataggcaggcaaagtcagcatctttgattacttgtcatttacctc 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catatagattggtacataggcaggcaaagtcagcatctttgattacttgtcatttacctc 320
Query: 121 atgttgcttccatcttgaggggagatctcagttagtttgtggttgatgacatcttctgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgttgcttccatcttgaggggagatctcagttagtttgtggttgatgacatcttctgga 380
Query: 181 gcattaatggtgaccacattttcttttactcctcacagaatcacgtcaatcctgccatgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcattaatggtgaccacattttcttttactcctcacagaatcacgtcaatcctgccatgg 440
Query: 241 actttatatagacccctcctgggatgttggctctggacaacatgctgtatttcgctaagc 300
|||| | | ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 acttcacacagacccctcctgggatgctggctctggacaacatgctgtatttcgctaagc 500
Query: 301 accaccaggatgcatacatccgggtaagcatgctggcttctctcagatactgccagtgtc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 accaccaggatgcatacatccgggtaagcatgctggcttctctcagatactgccagtgtc 560
Query: 361 gtatggaattctgttttccaacctacgcacaataggagattgctattagatgagtcaccc 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 561 gtatggaattctgttttccaacctacgcacagtaggagattgctattagatgagtcaccc 620
Query: 421 cagtattttccttttatcagtggtaaactaaagacatgaaattgatcaagggactaaaat 480
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 621 cagtattttccttttatcagtggtaaactaaagacatgaaattgatcaaggggctaaaat 680
Query: 481 aagaatgcctcatttttacattttttacacatacttaaacaatattactgaacaatgttt 540
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 681 aagaatgcctcatttt-acattttttacacatactttaacaatattactgaacaatgttt 739
Query: 541 tctatagtttcatattgacatatgaggaaaaacaattaagtagtaaaatacagaaatgaa 600
||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 740 tctatagtttcatattggcatatgaggaaaaactcttaagtagtaaaatacagaaatgaa 799
Query: 601 ctacatactcaaatcctgg 619
||| |||||||||||||||
Sbjct: 800 ctatatactcaaatcctgg 818
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1018
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1008
Effective search space: 613872
Effective search space used: 613872
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
