BAC Information

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BAC

Clone NameMSMg01-478D24
Chromosome13 (Build37)
Map Location 58,265,221 - 58,265,846
singlet/doubletsinglet
Overlap gene5133401N09Rik
Upstream geneLOC100040995, Spock1, Klhl3, Hnrpa0
Downstream geneUbqln1, LOC671252, Gkap1, Kif27, Hnrpk, Rmi1, LOC100041086, Slc28a3, LOC100041510, LOC435361, Ntrk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478D24.T7 (MSMg01no478_d24.b1)MSMg01-478D24.TJ (MSMg01no478_d24.g1)
ACCAG559410AG559411
length740805
length of high quality
(start - end)
623 (64 - 686)146 (69 - 214)
definitionCHROMAT_FILE: MSMg01no478_d24.b1 PHD_FILE: MSMg01no478_d24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:56 2005CHROMAT_FILE: MSMg01no478_d24.g1 PHD_FILE: MSMg01no478_d24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGGCCGCTAAACGACTACTATAGTCAGAACACCGCGGAATTCTTTATT
TTTACCGGCAGAGTTTCTCTGTTGACCAGGGTGGTCTGGAATGCAGAGAT
CTGCCTGCCTCTGCCACCCCGAGGGCAGGGATTAAAGGCGTACACCACCA
CCATCGGGCTGTACTGTAAATTCTTAATTGGGGAAAAACCGCAGTGCTTG
GAGGCAGAAGCCGTTGTTTGACTGTGTTAGGAGTTTGTGGCATGGTTGGC
AGTGTGCAGCTGTGAGAGGACAGGGGGAGGGTGTTAAAAGTTAAAAATGC
ACTTGAGAGATGTTTCTGTGGTTAAGAACACTGACTGCTCTTCCAGAGGT
CCTGAGTTCAAATCCCAGCAGCCACGTGGTGTCTCACAACCATCTGTAAT
GGGATCCGATGACCTCTTCTGGTGTGTCTGAGAGCTACAGTTTACTCGTG
ATGTAATAAATCTTTTTTTTTTTTTAAAGTTAAAGACTGAAGTTTAAATT
GATATACAATGAAACCTGATGGCCAGAGGAAATCCTGTAATCAGTGCTAG
AAATTACTACCTTGAGAAAGAACAATAGCTTGTGCCTGTATCTGTACAAA
AGAATGAAATTTGCTATCTCGGAAACTGGGTTCAGCAATAGAAACCCCAA
CAGAACCAAGCCGCCCACTGCATGCCACACGCCCAGTACAGTGGCAACTA
CTTTTAAATATTTCACGTTAGCATAGAAAATCATAGGCTN
GGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTATACGTAGAACTCCAGTTCTAGAGGATCTGG
AACCCTCAAAATGGCATGCATGCAGGCAAAAAACATCAGTGCACATAAAA
ATAAATAAATCTAAAGAGCGAGGCAGGGAGGGAGAGGGAGGGAGGGAGGG
AGGGAGGAAGGAANANAACNNNCNNAANGAGCTGGNGCATGCCTGTCATC
CCAGCACTTGGGAGGCATAANTGGGAGGATCATGAACTCCAGGCCATCCT
GCACTGCACATTTTTTTCTGGGATAGTGTGGGGTACGTACTGCCCTGTGC
CATCATGCCCCCTTTTTTTGTTTTTCGGCGGGCAAACATCATTTAGTACA
CATCTTTACCCCCAGGTTTCATCCAAATACCTTTTTACATGAACTGTGAA
TAATCCGCTCTCACATGATGCATATGTCACACTCCTGTCATCCCAGCACT
CCCTGATGCTTAATTATTGTAGGCTCTAGGTCTTGCTCATGGAGCCAGCT
TTGGTATACTAACCTATTTCATGCATAGTTCTCCCTCTAACCTTTTTCAC
CTCAGTAGGCGTTTTTCACCCTTTTATATTTTGATCAATTCCCCACCATG
ACTATCTTTAATCCCTGTATCCCGTCCTTCAAACCTGATATTTGCTTCCG
TCTAACCGTTTCTCGCGGATTTCTGTGACTTACCNCGTCTTTTCTGCACC
ACCATACTACCCGGCGCGACCACTCATATTCTTTACTCCCGTTGCCCCTT
CTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_d24.b1 MSMg01no478_d24.b1 CHROMAT_FILE:
MSMg01no478_d24.b1 PHD_FILE: MSMg01no478_d24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:56 2005
         (623 letters)



>mm_chr13_58265021_58266046
          Length = 1026

 Score = 1110 bits (574), Expect = 0.0
 Identities = 612/626 (97%), Gaps = 3/626 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttctctgttgaccagggtggtctggaatgcagagatctgcctgcctctgccaccccgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttctctgttgaccagggtggtctggaatgcagagatctgcctgcctctgccaccccgag 260

                                                                       
Query: 61  ggcagggattaaaggcgtacaccaccaccatcgggctgtactgtaaattcttaattgggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcagggattaaaggcgtacaccaccaccatcgggctgtactgtaaattcttaattgggg 320

                                                                       
Query: 121 aaaaaccgcagtgcttggaggcagaagccgttgtttgactgtgttaggagtttgtggcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaaccgcagtgcttggaggcagaagccgttgtttgactgtgttaggagtttgtggcat 380

                                                                       
Query: 181 ggttggcagtgtgcagctgtgagaggacagggggagggtgttaaaagttaaaaatgcact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggttggcagtgtgcagctgtgagaggacagggggagggtgttaaaagttaaaaatgcact 440

                                                                       
Query: 241 tgagagatgtttctgtggttaagaacactgactgctcttccagaggtcctgagttcaaat 300
           |||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagagatggctcagtggttaagaacactgactgctcttccagaggtcctgagttcaaat 500

                                                                       
Query: 301 cccagcagccacgtggtgtctcacaaccatctgtaatgggatccgatgacctcttctggt 360
           |||||||||||||||||||||||||||||||||||| |||||| ||||| ||||| ||||
Sbjct: 501 cccagcagccacgtggtgtctcacaaccatctgtaaagggatcggatgatctcttttggt 560

                                                                       
Query: 361 gtgtctgagagctacagtttactcgtgatgtaataaatcttttttttttttt---aaagt 417
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||   |||||
Sbjct: 561 gtgtctgagagctacagtttactcgtgatgtgataaatcttttttttttttttttaaagt 620

                                                                       
Query: 418 taaagactgaagtttaaattgatatacaatgaaacctgatggccagaggaaatcctgtaa 477
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 621 taaagactgaagtttaaattgacatacaatgaaacctgatggccagaggaaatcctgtaa 680

                                                                       
Query: 478 tcagtgctagaaattactaccttgagaaagaacaatagcttgtgcctgtatctgtacaaa 537
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 681 tcagtgctagaaattactaccttgcgaaagaacaatagcttgtgcctgtatctgtacaaa 740

                                                                       
Query: 538 agaatgaaatttgctatctcggaaactgggttcagcaatagaaaccccaacagaaccaag 597
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 741 agaatgaaatttgctatctcggaaactggtttcagcaatagaaaccccaacagaaccaag 800

                                     
Query: 598 ccgcccactgcatgccacacgcccag 623
           ||||||||||||||||||||||||||
Sbjct: 801 ccgcccactgcatgccacacgcccag 826


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1026
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1016
Effective search space:   622808
Effective search space used:   622808
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)