BAC Information

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BAC

Clone NameMSMg01-478G22
Chromosome13 (Build37)
Map Location 63,979,582 - 64,157,719
singlet/doubletdoublet
Overlap gene9330134C04Rik, EG665575
Upstream geneFbp1, LOC100042090, EG665524, 2010111I01Rik, Fancc, Ptch1, C030010C08Rik, 0610007P08Rik
Downstream geneHsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478G22.T7 (MSMg01no478_g22.b1)MSMg01-478G22.TJ (MSMg01no478_g22.g1)
ACCAG559550AG559551
length729736
length of high quality
(start - end)		389 (319 - 707)663 (64 - 726)
definitionCHROMAT_FILE: MSMg01no478_g22.b1 PHD_FILE: MSMg01no478_g22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:09 2005CHROMAT_FILE: MSMg01no478_g22.g1 PHD_FILE: MSMg01no478_g22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,157,331 - 64,157,719)(63,979,582 - 63,980,244)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGGGCCGCGGAATTC
TCTATTCCGACAATGGGAACAGTAGAAATGAGATCTTCTGGGTCTCCAAT
TCTTAAGATGTGGCGACATGGAGGTGATACGTTCTGCCCTAAGCTAGAGT
CTTCTGAATGATTATGTTCTTATATGTCCTGTGGCTGAAGGGGTTAATGG
CTGGGACCCAGTTGAGGTTGCCAGCTAGAGCCTCTATGTGGTCTCTGACA
GATGCTTGTTCTTCCTCACACCACAGTGGCTGACCTCTAAGCATACCCAT
TCCAAAGAATTCTTCTTTGTTTACCGTCTCTCATAGGTTAGCCTTACAAG
TCACAATACACCATGTTTAAACCCACCCACCCCCTATATGAGAGTCCTCA
AAGCCTACTTCTCCAGCTGGGAGCACTTACCTGGCACAAATGGAATCAGA
GCTTGCATCTCAGCACTGCAAGCAAGCACATACAATACCTCTCAATTTTG
GGGAAGGGAGGGTATAAAAATGTAATAGGAGATATTATCTCGGACCTTCT
TTGGAAGACACAATGTGTCACATTAATCTTAGATTCAAGTGTTTGTCTTA
ACATGCATCAATCTCCTTCATGAGCCAGTGAGGCTTTTTTACTTTTATTT
TTTAAATTGAGATAGATATGGGCGGTGCCGTCTCTGGCATGTAGTCCTGG
GTTGTATAAGAAAGCAGACTTATCAAACN

AGTGTGAGGCCTGGCGGCCGCCTGGCCTAAAAGGGGGGTGACCTATAGAT
TTCCCGCGGAATTCAGTTTCTTCCGGTTTTTGTTTGTATTGTTTTGTTTT
GTTTTGTTTTTGAATCTGAAAGATACATACACAAAATTCTAGGATTTCCT
ATTATCTTTTATGAAGGATTTTCATAATGTTAAAATAATAAATTCTGTGG
ATTTTTCCTATTTAAGATTGCTGTTACATGGAAATAAAGCCTTACGTAAA
TATAATTTTTTGTTTATATGTGGTCATTTTCATCAGAGGCTTTTAAATAT
GTATCCATTGGTGTATTCATCTAGAAGCTTAATGTTTATTGTTGTATGGG
TAGGGGCTAAAAGTACATGTTGCATATAACAGTGATAAAATGTAATGTTG
CTTTTAAGGATGAAGAAGGGGAAAATCCCTCTAAACTTTCCAGCTGTCTT
CATTAGGATTCAGAATGTCTTAACAATAAAACCAGAGTGCAAAGTAAAAC
TCATGACTACAGAAATATGAGTTTAAAAGTTGAGGATTGAGAGAAAGATA
GACTATGGATGGATAGAGCAATGTATTCTACTTAGATATCTCTTTTTCCT
AAGTTTTAAGATTTATTTATTTTATGTATATGACTACACCATAGCTGTCT
TCAGACACACCAAAAGAGGGCATTGGATCCCATTCATTGTTGTTCTAAAA
TGAAAACAGCCTAACTGTCCTTGAGCAGATAAATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_g22.b1 MSMg01no478_g22.b1 CHROMAT_FILE:
MSMg01no478_g22.b1 PHD_FILE: MSMg01no478_g22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:09 2005
         (389 letters)



>mm_chr13_64157314_64158102
          Length = 789

 Score =  752 bits (389), Expect = 0.0
 Identities = 389/389 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtttaccgtctctcataggttagccttacaagtcacaatacaccatgtttaaacccaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gtttaccgtctctcataggttagccttacaagtcacaatacaccatgtttaaacccaccc 347

                                                                       
Query: 61  accccctatatgagagtcctcaaagcctacttctccagctgggagcacttacctggcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 accccctatatgagagtcctcaaagcctacttctccagctgggagcacttacctggcaca 287

                                                                       
Query: 121 aatggaatcagagcttgcatctcagcactgcaagcaagcacatacaatacctctcaattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 aatggaatcagagcttgcatctcagcactgcaagcaagcacatacaatacctctcaattt 227

                                                                       
Query: 181 tggggaagggagggtataaaaatgtaataggagatattatctcggaccttctttggaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 tggggaagggagggtataaaaatgtaataggagatattatctcggaccttctttggaaga 167

                                                                       
Query: 241 cacaatgtgtcacattaatcttagattcaagtgtttgtcttaacatgcatcaatctcctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 cacaatgtgtcacattaatcttagattcaagtgtttgtcttaacatgcatcaatctcctt 107

                                                                       
Query: 301 catgagccagtgaggcttttttacttttattttttaaattgagatagatatgggcggtgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 catgagccagtgaggcttttttacttttattttttaaattgagatagatatgggcggtgc 47

                                        
Query: 361 cgtctctggcatgtagtcctgggttgtat 389
           |||||||||||||||||||||||||||||
Sbjct: 46  cgtctctggcatgtagtcctgggttgtat 18


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no478_g22.g1 MSMg01no478_g22.g1 CHROMAT_FILE:
MSMg01no478_g22.g1 PHD_FILE: MSMg01no478_g22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:09 2005
         (663 letters)



>mm_chr13_63979382_63980444
          Length = 1063

 Score = 1282 bits (663), Expect = 0.0
 Identities = 663/663 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtttcttccggtttttgtttgtattgttttgttttgttttgtttttgaatctgaaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtttcttccggtttttgtttgtattgttttgttttgttttgtttttgaatctgaaaga 260

                                                                       
Query: 61  tacatacacaaaattctaggatttcctattatcttttatgaaggattttcataatgttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacatacacaaaattctaggatttcctattatcttttatgaaggattttcataatgttaa 320

                                                                       
Query: 121 aataataaattctgtggatttttcctatttaagattgctgttacatggaaataaagcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aataataaattctgtggatttttcctatttaagattgctgttacatggaaataaagcctt 380

                                                                       
Query: 181 acgtaaatataattttttgtttatatgtggtcattttcatcagaggcttttaaatatgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acgtaaatataattttttgtttatatgtggtcattttcatcagaggcttttaaatatgta 440

                                                                       
Query: 241 tccattggtgtattcatctagaagcttaatgtttattgttgtatgggtaggggctaaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccattggtgtattcatctagaagcttaatgtttattgttgtatgggtaggggctaaaag 500

                                                                       
Query: 301 tacatgttgcatataacagtgataaaatgtaatgttgcttttaaggatgaagaaggggaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacatgttgcatataacagtgataaaatgtaatgttgcttttaaggatgaagaaggggaa 560

                                                                       
Query: 361 aatccctctaaactttccagctgtcttcattaggattcagaatgtcttaacaataaaacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatccctctaaactttccagctgtcttcattaggattcagaatgtcttaacaataaaacc 620

                                                                       
Query: 421 agagtgcaaagtaaaactcatgactacagaaatatgagtttaaaagttgaggattgagag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agagtgcaaagtaaaactcatgactacagaaatatgagtttaaaagttgaggattgagag 680

                                                                       
Query: 481 aaagatagactatggatggatagagcaatgtattctacttagatatctctttttcctaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaagatagactatggatggatagagcaatgtattctacttagatatctctttttcctaag 740

                                                                       
Query: 541 ttttaagatttatttattttatgtatatgactacaccatagctgtcttcagacacaccaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttttaagatttatttattttatgtatatgactacaccatagctgtcttcagacacaccaa 800

                                                                       
Query: 601 aagagggcattggatcccattcattgttgttctaaaatgaaaacagcctaactgtccttg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aagagggcattggatcccattcattgttgttctaaaatgaaaacagcctaactgtccttg 860

              
Query: 661 agc 663
           |||
Sbjct: 861 agc 863


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space:   687609
Effective search space used:   687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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