Query= MSMg01no478_n20.b1 MSMg01no478_n20.b1 CHROMAT_FILE:
MSMg01no478_n20.b1 PHD_FILE: MSMg01no478_n20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:40 2005
(408 letters)
>mm_chr13_113243796_113244603
Length = 808
Score = 708 bits (366), Expect = 0.0
Identities = 395/408 (96%), Gaps = 6/408 (1%)
Strand = Plus / Plus
Query: 1 ctgctccccatgggccagccatacccattcaaaccactgcatctatccagcaaggaagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgctccccatgggccagccatacccattcaaaccactgcatctatccagcaaggaagaa 260
Query: 61 atggagatatcaggcctccatcagcacccaacctttcttctgtgttctgctctcttcaga 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atggagataccaggcctccatcagcacccaacctttcttctgtgttctgctctcttcaga 320
Query: 121 agctagatagcactaatgggtttgtgttttgtagcaggaaacaaaaagcactaggattat 180
|||||||||||||| ||||| ||||||||||| ||||||| |||||||||||||||||||
Sbjct: 321 agctagatagcactcatgggcttgtgttttgtggcaggaagcaaaaagcactaggattat 380
Query: 181 ttgagagcttggggttagaccttagatccttagcccttctgaatgtgactctgttgacta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgagagcttggggttagaccttagatccttagcccttctgaatgtgactctgttgacta 440
Query: 241 gggacaatcccaagcaagtgagctgacttctctgatgctctgtttccttgtctgaaaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggacaatcccaagcaagtgagctgacttctctgatgctctgtttccttgtctgaaaaaa 500
Query: 301 aaaaaaaaaaggggggtgggggtggaattagaatcatgttggtctcattttagaacatga 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaag------ggggggtgggggtggaattagaatcatgttggtctcattttagaacatga 554
Query: 361 gaaattctgaaaaaggtcatgttcataaaccacttagcatcctgtttg 408
| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ggaattctgaaaaaggtcatgttcataaaccacttagcatcctgtttg 602
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space: 318801
Effective search space used: 318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no478_n20.g1 MSMg01no478_n20.g1 CHROMAT_FILE:
MSMg01no478_n20.g1 PHD_FILE: MSMg01no478_n20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:40 2005
(683 letters)
>mm_chr13_113427435_113428520
Length = 1086
Score = 1102 bits (570), Expect = 0.0
Identities = 599/610 (98%), Gaps = 3/610 (0%)
Strand = Plus / Minus
Query: 77 aagggccaatgtaacagattttgtcacaagttattttcatatgttttaggttgaaatgca 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1086 aagggccaatgtaacagattttgtcacaagttattttcatatgttttaggttgaaatgca 1027
Query: 137 tgttgatattttaaaactagaactctgagctaggtatggtaatgcatagctatattccta 196
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1026 tgttgatgttttaaaactagaactctgagctaggtatggtaatgcacagctatattccta 967
Query: 197 gcagtacggaagcttgggagcctgtgggctcacaaccagtccagagctgcttattaagat 256
|||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 966 gcagtacggaagtttgggagcctgtgggctcacaaccagtccagagctgcacagtaagat 907
Query: 257 ctgtctcagacaaaaccaaaataacccttctggttgaatggcaataactttaacaattat 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 ctgtctcagacaaaaccaaaataacccttctggttgaatggcaataactttaacaattat 847
Query: 317 cttggtactatatataatctcagaag---ttctccttatggctgacctacaattttatat 373
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 846 cttggtactatatataatctcagaagttcttctccttatggctgacctacaattttatat 787
Query: 374 atagtttaatcttggcagtgatttttttgaacttgtataattcaatgtgtgttaatgtgc 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 atagtttaatcttggcagtgatttttttgaacttgtataattcaatgtgtgttaatgtgc 727
Query: 434 ttttgatttgattcttagaattaaaatataacattgattagctttttttatccttcaaat 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ttttgatttgattcttagaattaaaatataacattgattagctttttttatccttcaaat 667
Query: 494 gatggctgagtatctttaggttcttgaattacattacagttcataagatatgatgaaaat 553
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 666 gatggctgagtatctttaggtttttgaattacattacagttcataagatatgatgaaaat 607
Query: 554 acttggttgttggcatatgtagttaatacaggcttttaggaattttgaagttttccttca 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 acttggttgttggcatatgtagttaatacaggcttttaggaattttgaagttttccttca 547
Query: 614 acacctctaaactggaatgttagagagagaggtaagacagtttgtagggaccacagaaaa 673
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 546 acacctctaaactggaatgttagagagagaggtaagacagtttgtagggaccacaggaaa 487
Query: 674 ctttctcaca 683
||||||||||
Sbjct: 486 ctttctcaca 477
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1086
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1076
Effective search space: 724148
Effective search space used: 724148
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
