BAC Information

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BAC

Clone NameMSMg01-479A08
Chromosome13 (Build37)
Map Location 37,330,291 - 37,503,974
singlet/doubletdoublet
Overlap geneLy86
Upstream geneFars2, LOC666758, Nrn1, F13a1
Downstream geneLOC100042794, LOC100042800, LOC100042802, LOC100041624, Rreb1, Ssr1, Cage1, Riok1, Dsp, 6530403A03Rik, Bmp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479A08.T7 (MSMg01no479_a08.b1)MSMg01-479A08.TJ (MSMg01no479_a08.g1)
ACCAG559999AG560000
length820762
length of high quality
(start - end)
304 (73 - 376)352 (328 - 679)
definitionCHROMAT_FILE: MSMg01no479_a08.b1 PHD_FILE: MSMg01no479_a08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:52 2005CHROMAT_FILE: MSMg01no479_a08.g1 PHD_FILE: MSMg01no479_a08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,330,291 - 37,330,594)(37,503,623 - 37,503,974)
sequence
NNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAAATATACACTAAGTCAGCATCCCAATGTTTCTTTGTTA
ACCCTGCAAGGAAGATCTTTCTGCATTTTTCCAGTTCTTGTACCAATAAA
ATCAGCTGATAAGTGAGATAGAAAGAGAATAATTTATAAATATAAATAGA
AAGTAACAACATAAAATAGACACAAATGTGTAGACTTCAACAGCCTGTTC
TTTTATATGATTCTATTGTAAAGTATTTCAATGATGCCTAATTCTCTGTC
ATATATCTTTTCAATTTTTTCACTGTTACAGCAGGCTTGATCTCCATTTC
TGCAACTGGACAGACTTTATACTAAAGCCCTTGCTTTTGCATGACCTCTG
TCTTTGAGAATCTTACTTTAACTGAACCTANCGGGGCCCCAGGGGGCCAA
CTTTCCAGTCGGGGGGAGGGTTTCCCTTAAACAAATGGAACCTCCCCCTT
TGGGATAACCCAAAAATCTTATTTTTTTGTGTGAAAAAAAAAGGGAAACC
TCCCGGGGGTCCAAGTTTCCTTTCCGGAACCCCCTTATAAAAAACCCTCC
GGGGGGGGGATAAAACCCCGGGGGGAAAAAAAGAAAAAAACTCGGGGGGG
GAACCCCCTCTAAAAAAAAGGTTTAAAAAAAAGAGTTTGTTTTTGGGGGC
CCCCCCTTTTTTATTNNNAAGGGGNNGNNNNNNNNNNNNTTNNNNNNTTT
TNNNNNNNNNNNNNNNNNNNNGGGGGGGGTNNNGGNNNNGCTANNNNNNN
NNNNNNNNNNNNNNNNGGGG
NTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAAACATTGGAACCAATCCCCAACA
CTAAGATGCAGAGGTAGATGGGTGTCAGGCCCAGATCTCTTTGTCACTAG
CAAAGTGACAGTGGGCAATCTTGGCACTCAGCCTCTGGACTCACAAAATA
GAAATAGAAATCTTCCAGCAGGGCTCAAGGAGGACCAGAGACCTTGGCTG
TAGCCTCATCCAGCAGTGTGGTCCTCCGGAGGGATAATGGCAGTTGTCAC
TAGTTGATTGTTAGCCAGCTTATATGAGGCTCACTTGATGGATTCTGACA
GCTGCGATGACACCCAGTTTTGGAAAGTCTTGTGCAGCAGCATCTGTTTT
TCTTTTTCACATTTTCAGTTTCAAACGTGGATGGATCTAGCTGTTCGAAG
AACACTGTTCGGATGGTGCCTGTTCTTCTCTGATGCTCACTTAACGCCCC
AGGGCTTTGCCAGTTTGTGCTCTTCCTCACTCCTAACAGGTCCTTCTTTG
GGAGAGCTTTTCATTAAATTGGTTTTTCTATGCTTCACGCTTTCGACTAG
AGCTTTTTTGGGGTCCACGAAGCTCCTGAGAATAGCTGCGAGTAACTCGG
GGAAGTGACTTTTTGTTGTTAGCTCGACAAAACAACACCTAAAATTAAAC
TCTCTTCCCTTCTCTTCTCAGGGCCTCTTCGTTTCTGAGATTCCTTTAAT
AACATTCTCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_a08.b1 MSMg01no479_a08.b1 CHROMAT_FILE:
MSMg01no479_a08.b1 PHD_FILE: MSMg01no479_a08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:52 2005
         (304 letters)



>mm_chr13_37330091_37330794
          Length = 704

 Score =  557 bits (288), Expect = e-163
 Identities = 300/304 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtcagcatcccaatgtttctttgttaaccctgcaaggaagatctttctgcatttttcc 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 aagtcagcatcccaatgtttctttgttaaccgtgcaaggaagatctttctgcatttttcc 260

                                                                       
Query: 61  agttcttgtaccaataaaatcagctgataagtgagatagaaagagaataatttataaata 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttcttgtaccaataaactcagctgataagtgagatagaaagagaataatttataaata 320

                                                                       
Query: 121 taaatagaaagtaacaacataaaatagacacaaatgtgtagacttcaacagcctgttctt 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaacagaaagtaacaacataaaatagacacaaatgtgtagacttcaacagcctgttctt 380

                                                                       
Query: 181 ttatatgattctattgtaaagtatttcaatgatgcctaattctctgtcatatatcttttc 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatatgattctattgtaaagtgtttcaatgatgcctaattctctgtcatatatcttttc 440

                                                                       
Query: 241 aattttttcactgttacagcaggcttgatctccatttctgcaactggacagactttatac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattttttcactgttacagcaggcttgatctccatttctgcaactggacagactttatac 500

               
Query: 301 taaa 304
           ||||
Sbjct: 501 taaa 504


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no479_a08.g1 MSMg01no479_a08.g1 CHROMAT_FILE:
MSMg01no479_a08.g1 PHD_FILE: MSMg01no479_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:52 2005
         (352 letters)



>mm_chr13_37503423_37504174
          Length = 752

 Score =  634 bits (328), Expect = 0.0
 Identities = 346/352 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggctcacttgatggattctgacagctgcgatgacacccagttttggaaagtcttgtgcag 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ggctcacttgctggattctgacagctgcgatgacacccagttttggaaagtcttgtgcag 493

                                                                       
Query: 61  cagcatctgtttttctttttcacattttcagtttcaaacgtggatggatctagctgttcg 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 492 cagcatctgtttttctttttcacattttcagtttcaaacatggatggatctagctgttcg 433

                                                                       
Query: 121 aagaacactgttcggatggtgcctgttcttctctgatgctcacttaacgccccagggctt 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aagaacactgtttggatggtgcctgttcttctctgatgctcacttaacgccccagggctt 373

                                                                       
Query: 181 tgccagtttgtgctcttcctcactcctaacaggtccttctttgggagagcttttcattaa 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tgccagtttgtgctcttcttcactcctaacaggtccttctttgggagagcttttcattaa 313

                                                                       
Query: 241 attggtttttctatgcttcacgctttcgactagagcttttttggggtccacgaagctcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 attggtttttctatgcttcacgctttcgactagagcttttttggggtccacgaagctcct 253

                                                               
Query: 301 gagaatagctgcgagtaactcggggaagtgactttttgttgttagctcgaca 352
           || ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 252 gaaaatagctgcgagtaacttggggaagtgactttttgttgttagctcgaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space:   254849
Effective search space used:   254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)