BAC Information

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BAC

Clone NameMSMg01-479D03
Chromosome13 (Build37)
Map Location 115,816,885 - 115,817,564
singlet/doubletsinglet
Overlap geneItga1
Upstream geneArl15, A430090L17Rik, Ndufs4, LOC100040958, Fst, 4930467J12Rik, Mocs2, Itga2, LOC100040975
Downstream genePelo, LOC100041023, LOC547402, LOC100041045
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479D03.T7 (MSMg01no479_d03.b1)MSMg01-479D03.TJ (MSMg01no479_d03.g1)
ACCAG560133AG560134
length739747
length of high quality
(start - end)
683 (53 - 735)665 (81 - 745)
definitionCHROMAT_FILE: MSMg01no479_d03.b1 PHD_FILE: MSMg01no479_d03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:06 2005CHROMAT_FILE: MSMg01no479_d03.g1 PHD_FILE: MSMg01no479_d03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCCTTTACCAGATGTCTTGCTACATCTTCACACGGAGGT
AACTATATTCCATGACCTCTGTTTCTAGTGATTACAGATGCCTTGGGCTT
TTCTCAGCAGATACACTTACTCAATTCCAGAGGCTTCTTAGAAACTCCCT
AACATAAACCCATGCTGGATTTTGGTGAGTAACCAACATTGATCCATGGG
TAACACACACATTCTCCACGCTAACAAATTCACAGAAGAAAGGCAGATCC
CAGGCAGACACCTCTGCTTTGACTTGACTGGCAGTAGAGCAAACACAACT
ATTGTCTCTGTAGATACTTTAGGGATTAATTCATTATGTGTTCCAATTCT
ATAAAGACATCAAAATCACCATAGGACTTTGTGGAACATGTGTTAAGATC
ACTGTAGGGCTTAGGTTAATCTGTACAGAGAAATCTTCACAGATTCCATA
AACTCCATTCTTTCCATATTATTTTATTTTATGTATGTGCATTGCATGTG
GCTTATGTACATATTTGTGCAGTTGTGTGCACAGGAGATGGAGGGTGCCC
CACACACATATGGAGGATAGTTACTGACATCAAATGCCTTCCTAGATTGC
TCTCCATCTTGTCTTTTGAGACAGGCTCTCTCATTCAATATAAAACATAT
CAAAATTGGCTAGGCTGGCTAATGAATAAACTCTAGGGA
NCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAAT
GGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCT
GGAAATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAG
GATCCAGCAATACCTTTCCTGGGCATATATCCAGAAGATGCCCCAACTGG
TAAGAAGGACACATGCTCTACTATGTTCATAGCAGCCTTATTTATAATAG
CCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAG
AAATTGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAA
TGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCC
TGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTG
ATAAGTGGATATTAGCCCCAAACCTAGAATTCCCAAGATATAAGGTACAA
TTTGCTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_d03.b1 MSMg01no479_d03.b1 CHROMAT_FILE:
MSMg01no479_d03.b1 PHD_FILE: MSMg01no479_d03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:06 2005
         (683 letters)



>mm_chr13_115816681_115817764
          Length = 1084

 Score = 1245 bits (644), Expect = 0.0
 Identities = 671/680 (98%), Gaps = 1/680 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccttta-ccagatgtcttgctacatcttcacacggaggtaactatattccatga 63
           ||||||||||||  ||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 205 gaattccctttatacagatgtctcgctacatcttcacacggaggtaactgtattccatga 264

                                                                       
Query: 64  cctctgtttctagtgattacagatgccttgggcttttctcagcagatacacttactcaat 123
           |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctccgtttctagtgattatagatgccttgggcttttctcagcagatacacttactcaat 324

                                                                       
Query: 124 tccagaggcttcttagaaactccctaacataaacccatgctggattttggtgagtaacca 183
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 325 tccagaggcttcttagaaactccctaacataagcccatgctggattttggtgagtaacca 384

                                                                       
Query: 184 acattgatccatgggtaacacacacattctccacgctaacaaattcacagaagaaaggca 243
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 385 acattgatccatgggtaacacacacattctccactctaacaaattcacagaagaaaggca 444

                                                                       
Query: 244 gatcccaggcagacacctctgctttgacttgactggcagtagagcaaacacaactattgt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gatcccaggcagacacctctgctttgacttgactggcagtagagcaaacacaactattgt 504

                                                                       
Query: 304 ctctgtagatactttagggattaattcattatgtgttccaattctataaagacatcaaaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctctgtagatactttagggattaattcattatgtgttccaattctataaagacatcaaaa 564

                                                                       
Query: 364 tcaccataggactttgtggaacatgtgttaagatcactgtagggcttaggttaatctgta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcaccataggactttgtggaacatgtgttaagatcactgtagggcttaggttaatctgta 624

                                                                       
Query: 424 cagagaaatcttcacagattccataaactccattctttccatattattttattttatgta 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cagagaaatcttcacagattccataaactccattctttccatattattttattttatgta 684

                                                                       
Query: 484 tgtgcattgcatgtggcttatgtacatatttgtgcagttgtgtgcacaggagatggaggg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgtgcattgcatgtggcttatgtacatatttgtgcagttgtgtgcacaggagatggaggg 744

                                                                       
Query: 544 tgccccacacacatatggaggatagttactgacatcaaatgccttcctagattgctctcc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgccccacacacatatggaggatagttactgacatcaaatgccttcctagattgctctcc 804

                                                                       
Query: 604 atcttgtcttttgagacaggctctctcattcaatataaaacatatcaaaattggctaggc 663
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 805 atcttgtcttttgagacaggctctctcattcaatgtaaaacatatcaaaattggctaggc 864

                               
Query: 664 tggctaatgaataaactcta 683
           ||||||||||||||||||||
Sbjct: 865 tggctaatgaataaactcta 884


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1084
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1074
Effective search space:   722802
Effective search space used:   722802
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)