Query= MSMg01no479_l15.b1 MSMg01no479_l15.b1 CHROMAT_FILE:
MSMg01no479_l15.b1 PHD_FILE: MSMg01no479_l15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:49 2005
(579 letters)
>mm_chr13_101910902_101911880
Length = 979
Score = 913 bits (472), Expect = 0.0
Identities = 543/586 (92%), Gaps = 34/586 (5%)
Strand = Plus / Plus
Query: 3 tatgttcctttagaaaagattttatttaatttgtatggctaatttggggacattttaaag 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tatgttcctttagaaaagattttatttaatttgtatggctaatttggggacattttaaag 262
Query: 63 gaagtctttcaaaccctatatattttgtgaattttgtgctgtaaggaatgtgaacttgta 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gaagtctttcaaaccctatatattttgtgaattttgtgctgtaaggaatgtgaacttgta 322
Query: 123 ctaggtgagttttagggacacacacacatgcaaatacacatacacacatatgaatacaca 182
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 323 ctaggtgagttttaggg--acacacacatgcaaatacacatacacacatatgagtacaca 380
Query: 183 tagagacacacctgcatacacacacaccttcacagatacatacaaagatacacacacaaa 242
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagagacacacatgcatacacacacaccttcacagatacatacaaagatacacacacaaa 440
Query: 243 -------tttttttatgcacacatacctttacagatacacaaatacatacacagatacac 295
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacacac-------atgcacacatacctttacagatacacaaatacatacacagatacac 493
Query: 296 acacacacacatacacagat--atacacacacacatacacataagcacacataaaaatat 353
||||||| |||||||||||| | ||||||||||||||||||||||||| ||||||||||
Sbjct: 494 acacacatacatacacagatacacacacacacacatacacataagcacatataaaaatat 553
Query: 354 agatatacacagatagaaagacacacacacacacacacacacacacacaaacatacacac 413
|||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 554 agatatacacagatagaaagacacacacacacacacac----------------acacac 597
Query: 414 acaaccccctcacttcatccagaatctagattgcactgcacagtatctttactgactttt 473
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 598 acaaccccctcacttcatccagaacctagattgcactgcacagtatctttactgactttt 657
Query: 474 gcgcagagctgtttcttctcttcctctgagttatttattgttctttttgcttcctgactt 533
| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 acacagagctgtttcttcccttcctctgagttatttattgttctttttgcttcctgactt 717
Query: 534 tctcagatttgaccttcagtcctgcttaagcctaggacttattaaa 579
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 tctcagatttgaccttcagtcctgcttaagcctaggacttattaaa 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 85
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no479_l15.g1 MSMg01no479_l15.g1 CHROMAT_FILE:
MSMg01no479_l15.g1 PHD_FILE: MSMg01no479_l15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:49 2005
(323 letters)
>mm_chr13_102102289_102103011
Length = 723
Score = 543 bits (281), Expect = e-159
Identities = 311/321 (96%)
Strand = Plus / Minus
Query: 1 atacacatgaggaaaaataaatctgtttaaaatactaaagacttaactaagtataaaagc 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 521 atacacatgaggaaaaataaatctgtttaaaatactaaagactgaactaagtataaaagc 462
Query: 61 ctcttcctcccttttaacaatttatgagcccaccaaataatgtaatgtctcatgggactg 120
||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 461 ctctttctcccttttaacaatttatgagttcacaaaataatgtaatgtctcatgggactg 402
Query: 121 acaatgcctgttaacacgtgtgataactgatgggaagacaaattgatacatccagtattc 180
| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 401 ataatgcctgttaatacgtgtgataactgatgggaagacaaattgatacatctagtattc 342
Query: 181 atctatacaatttacatgatcagcatactattagttctaaattgtaggctgtgaacagtt 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 atctatacaatttacatgagcagcatactattagttctaaattgtaggctgtgaacagtt 282
Query: 241 aagaatatgtagattatttggagagtgtatatgaaacataattgacattttataacctgg 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 281 aagaatatgtagattatttggagagtgtatatgaaacataattgacattttataacttgg 222
Query: 301 atgcctaaaatagaacaaaaa 321
|||||||||||||||||||||
Sbjct: 221 atgcctaaaatagaacaaaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space: 224196
Effective search space used: 224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
