BAC Information

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BAC

Clone NameMSMg01-479N01
Chromosome13 (Build37)
Map Location 81,929,676 - 81,930,342
singlet/doubletsinglet
Overlap geneCetn3
Upstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98, Lysmd3, Polr3g, 2900024O10Rik
Downstream geneLOC238756
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479N01.T7 (MSMg01no479_n01.b1)MSMg01-479N01.TJ (MSMg01no479_n01.g1)
ACCAG560604AG560605
length764759
length of high quality
(start - end)
679 (54 - 732)667 (80 - 746)
definitionCHROMAT_FILE: MSMg01no479_n01.b1 PHD_FILE: MSMg01no479_n01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:56 2005CHROMAT_FILE: MSMg01no479_n01.g1 PHD_FILE: MSMg01no479_n01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGN
GNGGAATTCTCACCTGTTTCATACCGAATGGCAGAGAAGCACCTGAAAAA
ATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGA
GATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGAC
AGCAGATGCTGCGTGGATGTGGAGAAAGAGGAACACTGCTCCATTGTTGG
TGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCT
CAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGG
GCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACT
ATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAG
ATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAA
TGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGC
AAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACAATCACA
AAGGAACTCAGCCCCAAACCTAGGATACCCAAGATATAAGATACAATTTG
CTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGACACTATG
CCCCTCCTTAGAATTGGGAACAAAACACCCATGGAAGGAGTTACAAAGAC
AAAGTTTGGAGCTG
TGCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACTAAGCCTGTGAAATTAAC
AGAAGTCATTGCCAACACCAATATAAGCATAAGACAAGTTAGTAAATGCA
AATTCTATCAGCACTTTCATGATTCAAAAAAATTACATTGATTTCAGCTA
CTGTGAAGATGGGCTAAACCTCTCTGGAAGCAGGTCTAAAGCAGGGCCAT
TTTACTCTTTTAGAATGAAGCCATATATCAATATACTAAGCTTATATATT
TTAATAGCATAGGCCTTTAATAAAGTCATAATAAAAACTGATGTCTATAG
TATAAAATTTTACGTTGCTTGGTAGAATTCTCAAAATATCTATTTCTGAA
GTAACTGCATATGCTGTTCTGCTACTATAAGAAAAAGCACTTATCATTCT
ATCATTAACAGTGAACTGCTGGGATCTATAGATTCATTTGAAATTTTCAA
ATATCTGTAGATGGAAAGTACTGGGATGTTTATTGAATCCTAAGTAAAAA
AATACAATCTAAGTCCTCTACAAGTTGTTGTCTGTCTATTGTTATTTCAT
CTGTATTTGGCTGAATAAGCACCTAGTCAAAGCTAATGTTACATCAACTA
CACATATATCCAAAATTATCTCTCGCCATTAATTTTATCCAAAAAAAGAT
TTCCAAAAACCTAATTGAAGACTATTACTATAAGTATGCAAATCAAAGCT
CATAAATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_n01.g1 MSMg01no479_n01.g1 CHROMAT_FILE:
MSMg01no479_n01.g1 PHD_FILE: MSMg01no479_n01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:56 2005
         (667 letters)



>mm_chr13_81929476_81930542
          Length = 1067

 Score = 1251 bits (647), Expect = 0.0
 Identities = 662/667 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactaagcctgtgaaattaacagaagtcattgccaacaccaatataagcataagacaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 aactaagcctgtgaaattaacagaagtcattgccaacaccaatataagcataagacaagt 808

                                                                       
Query: 61  tagtaaatgcaaattctatcagcactttcatgattcaaaaaaattacattgatttcagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 tagtaaatgcaaattctatcagcactttcatgattcaaaaaaattacattgatttcagct 748

                                                                       
Query: 121 actgtgaagatgggctaaacctctctggaagcaggtctaaagcagggccattttactctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 actgtgaagatgggctaaacctctctggaagcaggtctaaagcagggccattttactctt 688

                                                                       
Query: 181 ttagaatgaagccatatatcaatatactaagcttatatattttaatagcataggccttta 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ttagaataaagccatatatcaatatactaagcttatatattttaatagcataggccttta 628

                                                                       
Query: 241 ataaagtcataataaaaactgatgtctatagtataaaattttacgttgcttggtagaatt 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 627 ataaagtcataataaaaactgatgtctatagtataaaattttatgttgcttggtagaatt 568

                                                                       
Query: 301 ctcaaaatatctatttctgaagtaactgcatatgctgttctgctactataagaaaaagca 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 567 ctcaaaatatctatttctgaagtaactccatatgctgttctgctactataagaaaaagca 508

                                                                       
Query: 361 cttatcattctatcattaacagtgaactgctgggatctatagattcatttgaaattttca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 cttatcattctatcattaacagtgaactgctgggatctatagattcatttgaaattttca 448

                                                                       
Query: 421 aatatctgtagatggaaagtactgggatgtttattgaatcctaagtaaaaaaatacaatc 480
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aatgtctgtagatggaaagtactgggatgtttattgaatcctaagtaaaaaaatacaatc 388

                                                                       
Query: 481 taagtcctctacaagttgttgtctgtctattgttatttcatctgtatttggctgaataag 540
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 taagtcctcttcaagttgttgtctgtctattgttatttcatctgtatttggctgaataag 328

                                                                       
Query: 541 cacctagtcaaagctaatgttacatcaactacacatatatccaaaattatctctcgccat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cacctagtcaaagctaatgttacatcaactacacatatatccaaaattatctctcgccat 268

                                                                       
Query: 601 taattttatccaaaaaaagatttccaaaaacctaattgaagactattactataagtatgc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 taattttatccaaaaaaagatttccaaaaacctaattgaagactattactataagtatgc 208

                  
Query: 661 aaatcaa 667
           |||||||
Sbjct: 207 aaatcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)