Query= MSMg01no480_f16.b1 MSMg01no480_f16.b1 CHROMAT_FILE:
MSMg01no480_f16.b1 PHD_FILE: MSMg01no480_f16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:38 2005
(604 letters)
>mm_chr13_48776413_48777421
Length = 1009
Score = 1048 bits (542), Expect = 0.0
Identities = 590/614 (96%), Gaps = 15/614 (2%)
Strand = Plus / Plus
Query: 1 ctgagcgctctaagtcagcttcccagaaacgttcaatcacggatggttccctggttttct 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgagagctctaagtcagcttcccagaaacgttcaatcacggatggttccctggttttct 260
Query: 61 gacctaaaattccatttcactgacaaggactcatcgctaaggaggtagacatggatgctg 120
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 gacctgaaattccatttcactgacaaggactcatcactaaggaggtagacatggatgctg 320
Query: 121 gtggtaaagcaagctaaggggctcctgtggcaagttaccatggggcataccagggcttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggtaaagcaagctaaggggctcctgtggcaagttaccatggggcataccagggcttct 380
Query: 181 tttctagaagccagagaacctgaattaaaggaaccagtgtctggtctcatgccaggatac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttctagaagccagagaacctgaattaaaggaaccagtgtctggtctcatgccaggatac 440
Query: 241 ccttttt-----gtctctgagctggtcaggggcaggcactgtttggagtcctggccactt 295
|| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cc-----agggggtctctgagctggtcaggggcaggcactgtttggagtcctggccactt 495
Query: 296 ttcccttaccctttgcagtgatgacatcaagccttatcctatggctctttgtgaaaagtc 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ttcccttaccctttgcagtgatgacatcaagccttatcctatggctctttgtgaaaagtc 555
Query: 356 tcattatgcactgtgtatttaccgtctgtctctgtcaatcacagaatgtgcctgatggag 415
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||
Sbjct: 556 tcattatgcactgtgtatttaccgtctgtctctgccaatcacagaatgtacctgatcgag 615
Query: 416 gttcttctagtcctgagctcaaactcaacaggcttgctctaatcttttggagtaggagag 475
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 616 gttcttctagtcctgagctcaagctcaacaggcttgctctaatcttttggagtaggagag 675
Query: 476 gccttgtggag-----acacagaggatgaaccagccacagccaactcacggaccaggcat 530
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gccttgtggagcagagacacagaggatgaaccagccacagccaactcacggaccaggcat 735
Query: 531 aggaataggttgttctctcatagactgtcagccaggggcagcggctgtgatgtaaaccac 590
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 736 aggaataggctgttctctcatagactgtgagccaggggcagcggctgtgatgtaaaccac 795
Query: 591 taagttttgcaggg 604
||||||||||||||
Sbjct: 796 taagttttgcaggg 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1009
Length adjustment: 10
Effective length of query: 594
Effective length of database: 999
Effective search space: 593406
Effective search space used: 593406
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no480_f16.g1 MSMg01no480_f16.g1 CHROMAT_FILE:
MSMg01no480_f16.g1 PHD_FILE: MSMg01no480_f16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:38 2005
(560 letters)
>mm_chr13_48984804_48985763
Length = 960
Score = 1038 bits (537), Expect = 0.0
Identities = 555/561 (98%), Gaps = 2/561 (0%)
Strand = Plus / Minus
Query: 1 gttcccagctcccacaaaaggctatcaccagttcaggggatgggataggcttgactctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 gttcccagctcccacaaaaggctatcaccagttcaggggatgggataggcttgactctga 701
Query: 61 ccacttcacaggcactttgtacatatgagaaatcccacacagatatacaactaaacataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 ccacttcacaggcactttgtacatatgagaaatcccacacagatatacaactaaacataa 641
Query: 121 agtaaatattaaaaataaagaattgggagactgtgcagatggagatttatacagtagtgg 180
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 640 agtaaatattaaaaacaaagaattgggagactgtgcagatggagatttatacagcagtgg 581
Query: 181 ttccgttttgttagtgactatttaaatttgttacaactcgtgggtgatgtttttactgt- 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ttccgttttgttagtgactatttaaatttgttacaactcgtgggtgatgtttttactgtg 521
Query: 240 tngtcttttgacttcaggcggagcaggctgccaaggtggagaagatgcgccagagcatcc 299
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 t-gtccattgacttcaggcggagcaggctgccaaggtggagaagatgcgccagagcatcc 462
Query: 300 tggagggcctcagcttctcccggcaaaaccacccactgcccttcccaccgcctcctgctc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tggagggcctcagcttctcccggcaaaaccacccactgcccttcccaccgcctcctgctc 402
Query: 360 tgcccttctacccagcctctgtataccctcggcactttgggccagtcccaccctcacagg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tgcccttctacccagcctctgtataccctcggcactttgggccagtcccaccctcacagg 342
Query: 420 gcaggggcaggggctttgcaggtgagtcatatttcagaaatctttcaagttgggcagagt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gcaggggcaggggctttgcaggtgagtcatatttcagaaatctttcaagttgggcagagt 282
Query: 480 gtggtccttctggtggcaccacagcttgccacgtggagacatggaatagtatgttttagg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gtggtccttctggtggcaccacagcttgccacgtggagacatggaatagtatgttttagg 222
Query: 540 aagcactgtcatggcagtaat 560
|||||||||||||||||||||
Sbjct: 221 aagcactgtcatggcagtaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
