Query= MSMg01no480_m18.b1 MSMg01no480_m18.b1 CHROMAT_FILE:
MSMg01no480_m18.b1 PHD_FILE: MSMg01no480_m18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:13 2005
(572 letters)
>mm_chr13_73541023_73541994
Length = 972
Score = 1027 bits (531), Expect = 0.0
Identities = 560/571 (98%), Gaps = 4/571 (0%)
Strand = Plus / Minus
Query: 4 ggaattctattatcttcc--ccatgtttaaacaaagacaggagacatgacagcagggttc 61
|||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 772 ggaattctattatc--acagccatgtttaaataaagacaggagacatgacagcagggttc 715
Query: 62 aggcacaggagaatgagaagcaggagtcagggaaggcagctgtgcttagctgctaaagct 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 aggcacaggagaatgagaagcaggagtcagggaaggcagctgtgcttagctgctaaagct 655
Query: 122 gcctctaaagacaaaaggaaacgtggatgatagccaggactcagtcccactgcctgccag 181
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 654 gcctctaaagacaaaaggaaacgtagatgatagccaggactcagtcccattgcctgccag 595
Query: 182 gtggacacacagagtccagtctatgacaaagtacttgacagagcaatagactctggtgat 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gtggacacacagagtccagtctatgacaaagtacttgacagagcaatagactctggtgat 535
Query: 242 gatggctgctcttagagctgctgaagctcaaacagtccagtggttggaacgtccatgaca 301
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 534 gatggctgctcttagagctgctgaagctcaaatagcccagtggttggaacgtccatgaca 475
Query: 302 ctcatctctgtgtttccatatccattgctgtcagctgcataatttacaaggaggctgtta 361
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 474 ctcatctctgtgtttccatatccattgctgtcagctgcataatttacaaggaggttgtta 415
Query: 362 actgagagaacgaacagcggctttgatctgtttagaagaggcaccagcattctgaagagg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 actgagagaacgaacagcggctttgatctgtttagaagaggcaccagcattctgaagagg 355
Query: 422 gtctaggtgtgtctgtagagggctgatatccaaatgctggtgggcaatgagggctctttt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gtctaggtgtgtctgtagagggctgatatccaaatgctggtgggcaatgagggctctttt 295
Query: 482 ccagatctggaaggagaagcagatttcacactgcctgaatgtatcccatgtaccactgtt 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ccagatctggaaggagaagcagatttcacactgcctgaatgtatcccatgtaccactgtt 235
Query: 542 gggacagtagttttttgttgttgttgtttat 572
|||||||||||||||||||||||||||||||
Sbjct: 234 gggacagtagttttttgttgttgttgtttat 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no480_m18.g1 MSMg01no480_m18.g1 CHROMAT_FILE:
MSMg01no480_m18.g1 PHD_FILE: MSMg01no480_m18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:13 2005
(572 letters)
>mm_chr13_73402405_73403376
Length = 972
Score = 1085 bits (561), Expect = 0.0
Identities = 570/573 (99%), Gaps = 2/573 (0%)
Strand = Plus / Plus
Query: 1 cctcttgtttaacccttcaaactgtaccctgggggaccctagcaaacacttgggccagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctcttgtttaacccttcaaactgtaccctgggggaccctagcaaacacttgggccagac 260
Query: 61 atgcttgttgagaaggcacacaggaccttggaattcccatggaggatttgaaaagctggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgcttgttgagaaggcacacaggaccttggaattcccatggaggatttgaaaagctggc 320
Query: 121 tggacccccacacgtggccaaagaaagtgaggcctaagcgtggccaaagaaagcggctga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggacccccacacgtggccaaagaaagtgaggcctaagcgtggccaaagaaagcggctga 380
Query: 181 tgggggaaaaattcatgtctgtcataggtagcaggaggcccctagagacacgtgaggtcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggggaaaaattcatgtctgtcataggtagcaggaggcccctagagacacgtgaggtcc 440
Query: 241 ttgagtgntc-agcgccctagtctctgtccccttgcccactctacgattcctcccaccac 299
||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgaggg-tccagcgccctagtctctgtccccttgcccactctacgattcctcccaccac 499
Query: 300 agttcctgatgaccaccaactccctgagcacgtgctgcgagtcgggcggccgcacactgg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agttcctgatgaccaccaactccctgagcacgtgctgcgagtcgggcggccgcacactgg 559
Query: 360 ctgattccgggcctgcagcctcggcacaggcgcccgtctactgccctgtctacgagagcc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctgattccgggcctgcagcctcggcacaggcgcccgtctactgccctgtctacgagagcc 619
Query: 420 ggctgctggccactgcacgccacgaactcaattctgccgccgcgctcggcgtctacggga 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ggctgctggccactgcacgccacgaactcaattctgccgccgcgctcggcgtctacggga 679
Query: 480 gcccctatggcagctcgcagggctatggcaactacgtgacctatggctctgaggcatctg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gcccctatggcagctcgcagggctatggcaactacgtgacctatggctctgaggcatctg 739
Query: 540 ctttctactctctggtaaggggacaaataccct 572
|||||||||||||||||||||||||||||||||
Sbjct: 740 ctttctactctctggtaaggggacaaataccct 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
