Query= MSMg01no481_h01.b1 MSMg01no481_h01.b1 CHROMAT_FILE:
MSMg01no481_h01.b1 PHD_FILE: MSMg01no481_h01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:04 2005
(635 letters)
>mm_chr13_12407622_12408656
Length = 1035
Score = 793 bits (410), Expect = 0.0
Identities = 440/450 (97%)
Strand = Plus / Minus
Query: 186 aagaacactgactgttcttcaaaaggacctgagttcaaatcttaagaaccatgtatcagc 245
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 1031 aagaacactgactgttcttcaaaaggacctgagttcaaatcttaacaaccacgtatcagc 972
Query: 246 tcacaactgtctgtcactctagttccaagggatctcacacccttttctgacctctgtggg 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971 tcacaactgtctgtcactctagttccaagggatctcacacccttttctgacctctgtggg 912
Query: 306 cacaaggcacacagatataactgcatggtacagagatataactgcaggaaaaaacattta 365
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 911 cacaaggcacacagatataactgcatggtacatagatataactgcaggcaaaaacattta 852
Query: 366 tatgcacaaaataaaattttaaaaaattaaatcacagatgcaactacttttgcttaaaga 425
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 tatgcacaacataaaattttaaaaaattaaatcacagatgcaactacttttgcttaaaga 792
Query: 426 ttcctcatgaaaagaatttgttatgaaacatttttatgaacgaatgcagcattaataggt 485
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 ttcctcatgaaaagaaattgttatgaaacatttttatgaacgaatgcagcattaataggt 732
Query: 486 aaaataaactaaaaaatgaagccaaggaccaaacagcagctgaatgacacacgtttctct 545
||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||
Sbjct: 731 aaaataaactaaaaaatgaagtcaaggaccaaatagcagccgaatgacacacgtttctct 672
Query: 546 cctcggttcagagctaagttgtgctcaccactaagtaaccacattgttctgtgttacaat 605
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 671 cctcggttcagagctaagttgtgctcaccactaagtaaccgcattgttctgtgttacaat 612
Query: 606 ttcactgtgggaaaggcagtggattcaaat 635
||||||||||||||||||||||||||||||
Sbjct: 611 ttcactgtgggaaaggcagtggattcaaat 582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space: 640625
Effective search space used: 640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no481_h01.g1 MSMg01no481_h01.g1 CHROMAT_FILE:
MSMg01no481_h01.g1 PHD_FILE: MSMg01no481_h01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:05 2005
(604 letters)
>mm_chr13_12236720_12237724
Length = 1005
Score = 1013 bits (524), Expect = 0.0
Identities = 587/608 (96%), Gaps = 5/608 (0%)
Strand = Plus / Plus
Query: 1 ttttccatggcatagtct-aagtccagcagtaatgagcgaggccactggagagatctcct 59
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 ttttccatggcatagtctaaagtccagcagtaatgaacgaggccactggagagatctcct 260
Query: 60 cctcgggcttctagcagctatacttagtttacttagttatacttagttccagcaccccac 119
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 cctcgggcttctagcagctatacttagtttacttcgttatacttagttccagcaccccac 320
Query: 120 acactgccaccccaagtctctctttctatgtatgtctaagaacaattgtctttgcctctg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acactgccaccccaagtctctctttctatgtatgtctaagaacaattgtctttgcctctg 380
Query: 180 ccctggttatgagggcaatagaacatcaacactgaagactgtagtgttgtgagatgagat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccctggttatgagggcaatagaacatcaacactgaagactgtagtgttgtgagatgagat 440
Query: 240 atgaagtcttatgttgtgtccggccagcagatcacaacatgggttctagcctggaaagac 299
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 441 atgaagtcttatattgtgtccagccagcagatcacaacatgggttctagcctggaaaggc 500
Query: 300 attttggaaacctggaagagaagaggggctaggtgttgagataaagaaatgcagctaaga 359
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 501 attttggaaacctggaagagaagaggggctaggaggcgagataaagaaatgcagctaaga 560
Query: 360 caggcatgctgatcaaagctcaattttactgttctgcacacaattataaagcagggga-g 418
||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||| |
Sbjct: 561 caggcattctgatcaaagctcaattttactgttctgcacgcagttataaagcaggggaag 620
Query: 419 ggg-cccgattcccgccaattagtcttg-ggatccaatagcagggtgaccacgtgcatgg 476
||| |||||||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct: 621 gggacccgattcccgccaattaatcttgagg-tccaatagcagggtgaccacgtgcatgg 679
Query: 477 ctccgaacagcaaagcggcaggttccagcagtgggcgtggcagaaggattgagcgggaag 536
||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 680 ctccgaacagcaaagtggcaggttccagcagtgggcatggcagaatgattgagcgggaag 739
Query: 537 ctccacccctgagcaagcaggtttcaggctgggggaggggagactacagtcttaccttct 596
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 740 ctccacccctgagcaagcaggtttcaggctgggggaagggagactacagtcttaccttct 799
Query: 597 ctttctgt 604
||||||||
Sbjct: 800 ctttctgt 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1005
Length adjustment: 10
Effective length of query: 594
Effective length of database: 995
Effective search space: 591030
Effective search space used: 591030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
