BAC Information

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BAC

Clone NameMSMg01-482B11
Chromosome13 (Build37)
Map Location 69,203,684 - 69,212,108
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245, EG666272, LOC100042223, Mtrr, LOC100042233, Fastkd3, 1700001L19Rik, Adcy2, LOC666205
Downstream geneLOC218332, Pols, A530095I07Rik, Srd5a1, Nsun2, LOC100042260, 3110006E14Rik, 4930547H16Rik, Med10, EG620143, LOC100042291
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482B11.T7 (MSMg01no482_b11.b1)MSMg01-482B11.TJ (MSMg01no482_b11.g1)
ACCAG562344AG562345
length707728
length of high quality
(start - end)		667 (37 - 703)653 (76 - 728)
definitionCHROMAT_FILE: MSMg01no482_b11.b1 PHD_FILE: MSMg01no482_b11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:55 2005CHROMAT_FILE: MSMg01no482_b11.g1 PHD_FILE: MSMg01no482_b11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,211,446 - 69,212,108)(69,203,684 - 69,204,336)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTA
TAACTTACTAATGGAAGAAAGAATTAGGCACGAGACCAGAAATGTGATAC
TATTGAATGTGAAAGCTCACTATTCTAGTCATTCACTCCAAAACAAAATG
ACAAAACTCTTTGCAAAGCAGTACAAAATCTACAAGTAACAAAGAATATT
TTAAGAAAAAGTAACAATGAAGTTTAGCTGAGCAAATATTATCACATCAA
AATGTCATACTAATTCACTAAAAGTATAGTTTGTCAAAGAGATGTGAAAG
TACTTACAATGCCATGTTTGCTTTAATCTGTCTATCCTACCCATTCACCT
ACTATCTAGCATTTACACATGCGTAGAAACAACACGTAATGTCCATCTAC
CAGTTACAAAGCAGCTGGTAGGTGGACAGCATGGAATTCAACATGAAATT
TGAAGTCATGATTCATTTCTTCAATGTTGTCCATTTCTTCATTGTTCAAA
TTGTTTGTAGTGAAGATTTGCTTTTTCCCCCCTCAAAACATTAATTAGAA
TGTTTCTAATATGTGCTTTCCTACATTGCTCAAATAGTTTTTCTGACTCA
TAGAACTTACATCCCATCTTCCCATTCTGAGTCTCTGTGCACATTCACCT
GTCACTTACTGGGAGGATACAGTAAGTTTGAACATTTCCATTCTGCACCA
CCTGCAA

CTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXGTACGTGACGAGCGCTTTTTCTGAT
GCAAGGCATCCCTAAGGCTTGACCATTTGGCATTGAAAAGTCTAGGGCAT
GACACTGGAAGTCCTCATCCAGTCCTCAGCAAAGAGGCACTCCTGCAGGT
CAGTGGAGAATTGAAAAAGAAACTCATTACTGGAGCCAATCCAGTGACTC
AGACACATACCCTAACCATCAATTTCCTGGGCCAGTGCAAGGACATGTTC
TCATCTGAACCTGACACATAAGGAGATAAAGACACAGGACACAGGGCATG
GGTGGGCCATGTACAGGGATGCACAGCTCTCTGCCCTCAACACATACAGT
CTCTACTCATCGGCTGCCTGACACTGCCATTCTAATTACACAGGATTCAC
TGAAACATATGGCATCTTGGTGACTAATCTGCCATTAATGTTTTATGATT
TATGGAAAGTACTGGTGGCATTATGATACCTGGCACCATTAACATATCAG
CCTGGACACTTACAATCTTTGCAGCCTGTTACTGTAGCCTTGTTACTAGG
TAACAGCCAGGATATTATTTATCTTCTGTAGATAAACCCACCTTCCTGTC
TCCAACATAGCCCTCCCCCAACCCGATTTGACAGGAGCTCTTTGGAGCCT
CTGTATGATCTTTGGACACCGAGCTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_b11.b1 MSMg01no482_b11.b1 CHROMAT_FILE:
MSMg01no482_b11.b1 PHD_FILE: MSMg01no482_b11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:55 2005
         (667 letters)



>mm_chr13_69211242_69212308
          Length = 1067

 Score = 1274 bits (659), Expect = 0.0
 Identities = 662/663 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtataacttactaatggaagaaagaattaggcacgagaccagaaatgtgatac 64
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 gaattctgtaaaacttactaatggaagaaagaattaggcacgagaccagaaatgtgatac 808

                                                                       
Query: 65  tattgaatgtgaaagctcactattctagtcattcactccaaaacaaaatgacaaaactct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 tattgaatgtgaaagctcactattctagtcattcactccaaaacaaaatgacaaaactct 748

                                                                       
Query: 125 ttgcaaagcagtacaaaatctacaagtaacaaagaatattttaagaaaaagtaacaatga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ttgcaaagcagtacaaaatctacaagtaacaaagaatattttaagaaaaagtaacaatga 688

                                                                       
Query: 185 agtttagctgagcaaatattatcacatcaaaatgtcatactaattcactaaaagtatagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 agtttagctgagcaaatattatcacatcaaaatgtcatactaattcactaaaagtatagt 628

                                                                       
Query: 245 ttgtcaaagagatgtgaaagtacttacaatgccatgtttgctttaatctgtctatcctac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ttgtcaaagagatgtgaaagtacttacaatgccatgtttgctttaatctgtctatcctac 568

                                                                       
Query: 305 ccattcacctactatctagcatttacacatgcgtagaaacaacacgtaatgtccatctac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ccattcacctactatctagcatttacacatgcgtagaaacaacacgtaatgtccatctac 508

                                                                       
Query: 365 cagttacaaagcagctggtaggtggacagcatggaattcaacatgaaatttgaagtcatg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 cagttacaaagcagctggtaggtggacagcatggaattcaacatgaaatttgaagtcatg 448

                                                                       
Query: 425 attcatttcttcaatgttgtccatttcttcattgttcaaattgtttgtagtgaagatttg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 attcatttcttcaatgttgtccatttcttcattgttcaaattgtttgtagtgaagatttg 388

                                                                       
Query: 485 ctttttcccccctcaaaacattaattagaatgtttctaatatgtgctttcctacattgct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctttttcccccctcaaaacattaattagaatgtttctaatatgtgctttcctacattgct 328

                                                                       
Query: 545 caaatagtttttctgactcatagaacttacatcccatcttcccattctgagtctctgtgc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 caaatagtttttctgactcatagaacttacatcccatcttcccattctgagtctctgtgc 268

                                                                       
Query: 605 acattcacctgtcacttactgggaggatacagtaagtttgaacatttccattctgcacca 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 acattcacctgtcacttactgggaggatacagtaagtttgaacatttccattctgcacca 208

              
Query: 665 cct 667
           |||
Sbjct: 207 cct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no482_b11.g1 MSMg01no482_b11.g1 CHROMAT_FILE:
MSMg01no482_b11.g1 PHD_FILE: MSMg01no482_b11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:56 2005
         (653 letters)



>mm_chr13_69203484_69204536
          Length = 1053

 Score = 1263 bits (653), Expect = 0.0
 Identities = 653/653 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtacgtgacgagcgctttttctgatgcaaggcatccctaaggcttgaccatttggcattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtacgtgacgagcgctttttctgatgcaaggcatccctaaggcttgaccatttggcattg 260

                                                                       
Query: 61  aaaagtctagggcatgacactggaagtcctcatccagtcctcagcaaagaggcactcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaagtctagggcatgacactggaagtcctcatccagtcctcagcaaagaggcactcctg 320

                                                                       
Query: 121 caggtcagtggagaattgaaaaagaaactcattactggagccaatccagtgactcagaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggtcagtggagaattgaaaaagaaactcattactggagccaatccagtgactcagaca 380

                                                                       
Query: 181 cataccctaaccatcaatttcctgggccagtgcaaggacatgttctcatctgaacctgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cataccctaaccatcaatttcctgggccagtgcaaggacatgttctcatctgaacctgac 440

                                                                       
Query: 241 acataaggagataaagacacaggacacagggcatgggtgggccatgtacagggatgcaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acataaggagataaagacacaggacacagggcatgggtgggccatgtacagggatgcaca 500

                                                                       
Query: 301 gctctctgccctcaacacatacagtctctactcatcggctgcctgacactgccattctaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctctctgccctcaacacatacagtctctactcatcggctgcctgacactgccattctaa 560

                                                                       
Query: 361 ttacacaggattcactgaaacatatggcatcttggtgactaatctgccattaatgtttta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttacacaggattcactgaaacatatggcatcttggtgactaatctgccattaatgtttta 620

                                                                       
Query: 421 tgatttatggaaagtactggtggcattatgatacctggcaccattaacatatcagcctgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgatttatggaaagtactggtggcattatgatacctggcaccattaacatatcagcctgg 680

                                                                       
Query: 481 acacttacaatctttgcagcctgttactgtagccttgttactaggtaacagccaggatat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acacttacaatctttgcagcctgttactgtagccttgttactaggtaacagccaggatat 740

                                                                       
Query: 541 tatttatcttctgtagataaacccaccttcctgtctccaacatagccctcccccaacccg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tatttatcttctgtagataaacccaccttcctgtctccaacatagccctcccccaacccg 800

                                                                
Query: 601 atttgacaggagctctttggagcctctgtatgatctttggacaccgagctgtc 653
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atttgacaggagctctttggagcctctgtatgatctttggacaccgagctgtc 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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