Query= MSMg01no483_f24.b1 MSMg01no483_f24.b1 CHROMAT_FILE:
MSMg01no483_f24.b1 PHD_FILE: MSMg01no483_f24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:33 2005
(600 letters)
>mm_chr13_42800198_42801197
Length = 1000
Score = 781 bits (404), Expect = 0.0
Identities = 428/436 (98%)
Strand = Plus / Minus
Query: 5 gaattccagagctcgactcaaaggagatggaccccatccaaggatgagtattatctaaca 64
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gaatcccagagcgggactcaaaggagatggaccccatccaaggatgagtattatctaaca 377
Query: 65 aattacgaaataacactgggagaaggacggacctcagtcacatcttgtaaaagtgtaagg 124
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aattacaaaataacacttggagaaggacggacctcagtcacatcttgtaaaagtgtaagg 317
Query: 125 caaaaaagaaaaaaaaaagtgtaaggctcagatcacatgcaaaggccctgctcagttata 184
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 316 caaaaaagaaaaaaaaaagtgtaaggctcagattacatgcaaaggccctgctcagttata 257
Query: 185 acactcgatagttatttgtagctattgggttattgtcctgattcgattatactttgtgtt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 acactcgatagttatttgtagctattgggttattgtcctgattcgattatactttgtgtt 197
Query: 245 taacttaacacaagccagagtcatttgtggaagaagatgtttcagttaagaaagtgcctg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 taacttaacacaagccagagtcatttgtggaagaagatgtttcagttaagaaagtgcctg 137
Query: 305 ggtcattagaatgatctgtaggcaagtctgtaggaaattttcttgatgactgatttggga 364
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 136 ggtcattagaatgatctgtaggcaagtctgcaggaaattttcttgatgactgatttggga 77
Query: 365 ggacctaacccactctaggcagcaccacccctagccatgtggttctgtgttgtataagaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 76 ggacctaacccactctaggcagcaccacccctagccatgtggttctgtgttgtattagaa 17
Query: 425 gcaggctaagctaata 440
||||||||||||||||
Sbjct: 16 gcaggctaagctaata 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no483_f24.g1 MSMg01no483_f24.g1 CHROMAT_FILE:
MSMg01no483_f24.g1 PHD_FILE: MSMg01no483_f24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:33 2005
(488 letters)
>mm_chr13_42647356_42648243
Length = 888
Score = 861 bits (445), Expect = 0.0
Identities = 478/489 (97%), Gaps = 1/489 (0%)
Strand = Plus / Plus
Query: 1 agaaacagctaggagaaagcaggtgtcttattcaggcaggcattaaagtgtctttcttat 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 agaaacagctaggagaaagcaggtgtcttattcaggcaggcattaaagagtctttcttat 260
Query: 61 aaaagtgtaggacttttttggttgttaaaatgtagttatattttattcacactgacattg 120
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 aaaagtgtagaacttttttggttgttaaaatgtagttatattttattcacactgacatgg 320
Query: 121 tatgttcactactattattttgaaatggatgtttttaaatgtcacaggtataatttctaa 180
|||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 321 tatgtttactactattattttgaaatggatgtttttaaatgtcacaagaataatttctaa 380
Query: 181 cacagtaaatatagattaatataaacagtgtaggccaaggttcttcttgagaactgagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacagtaaatatagattaatataaacagtgtaggccaaggttcttcttgagaactgagag 440
Query: 241 attcttgaaaatttttaacagtggaaagtggttctgagaccaaaatcccccaacttctaa 300
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 441 attcttgaaaatttttaacagtggaaagtggttctgagaccaaaatcccctgactcctaa 500
Query: 301 cttaaaggtacagcactccctttcagaatgcacagatttcacttgcctttttaatgtagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttaaaggtacagcactccctttcagaatgcacagatttcacttgcctttttaatgtagt 560
Query: 361 tttgcaccataacatatgaataaagtcatagtctgacatctgatctttatgtgcctcctg 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttgcaccataacgtatgaataaagtcatagtctgacatctgatctttatgtgcctcctg 620
Query: 421 ttctgtctggtttt-tgtgtccacttgacacaagttagtcaccagagaggaaggagcctc 479
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttctgtctggttttatgtgtccacttgacacaagttagtcaccagagaggaaggagcctc 680
Query: 480 tgttgaaga 488
|||||||||
Sbjct: 681 tgttgaaga 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
