BAC Information

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BAC

Clone NameMSMg01-483G15
Chromosome13 (Build37)
Map Location 103,417,490 - 103,417,798
singlet/doubletsinglet
Overlap genenone
Upstream genePik3r1
Downstream geneCd180, Mast4, EG621312, EG432800, LOC432801, LOC100040045
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483G15.T7 (MSMg01no483_g15.b1)MSMg01-483G15.TJ (MSMg01no483_g15.g1)
ACCAG563348AG563349
length795781
length of high quality
(start - end)		634 (49 - 682)629 (76 - 704)
definitionCHROMAT_FILE: MSMg01no483_g15.b1 PHD_FILE: MSMg01no483_g15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:36 2005CHROMAT_FILE: MSMg01no483_g15.g1 PHD_FILE: MSMg01no483_g15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCG
CGGAATTCCCTACTTCGTAACATAATCTCCTACGAACCAGAAAGAGCAAC
AGAAACCAAGGACCAAAACACCCATCCAAAAAAGAAAACACCAGATATCA
ACACTTAGAATTATAATCTTCCCAAACCCAGATGTCTAGACACTAGCATA
AAAACACAATCAACAACAGCCAGGACAATACATCTCCACTAGAGCCCTGC
AACTCTACAATAGTATTCCTTGAGAATTACAACACAGCTGAAGCACAGAA
CAAAGACTTTAAAATAGCCTTTATGAATAAGATAAAAGTCCTTTAAAGGA
AATAAATAAATCCTTCAAAGAAATCTATGAAAACATAAACAGTGAAAGGA
AGTGACTAAAACAATCAAGACTAAAAGTGGAAATAGAATCAATCAAGAAA
ACCCAAACTGAGGGAGATCTAGAAATAAAAGTTTAGGACACAGAGGCAAC
TCTCACCAGCAGAATACAAGAGATGGAAGAGAGAACCCCAGCTACTCTTC
TAAAATAAGGTAAAATAAATGAGTACCTCTGTTAAATAAAATGTTAAATC
TAAACAAATCCAAGCACAAAAAACATCCAGAAAATCTCTCTCTCTCACAC
ACACACACCCTAATTTATAAATAGAGGAAGGAGAAGAAACCCAGGTCAAA
GACACAGAGAATATTTCCAACGAAATCTAAGAAAAAAAATTTCTCCCACA
TAAAGAAGGAGATGCTTANTAAAGTACAAATATATACATCAAATA

CGATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTCCGGTCCAGACTCTGGCACCCC
ATCTCCTGTTTAGACATCTCTCTCTCTCTCTCTTTGGTGACCACACATTC
ATATAGAATTCAGCTTGTCTAAATAAGACACACCTATTTATTTATTTATT
TATTTATTTTTAAAAATATTTTTTATTACGTATTTTCCTCAATTACATTT
CCAATGCTATCCCAAAAGTCACCCATACCCTCCCCCCCCACTCCCCTACC
CACCCATTCCCACTTTTTGGCCCTGGTGTTCCCCTGTACTGGGGCATATA
AAGTTTGTGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCC
ATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCAGGGTACTGGTTA
GTTCATAATGTTGTTGCACCTACAGGGTTGCAGATCTCTTTAGCTCCTTG
TATACTTTCTCTAGCTCCTCTATTGGGGGCCCTGTGCTCCATCCAATAGC
TGACTGTGAGCATCCACTTATGTGTTTGCTAGGCCCTGGCCTAGTCTCAC
AAGAGACGTCTATATCAGGGTCCTTTCAGCAAACGCTTGCTAGTGTTTGC
AATGGAAGACACACCTTTTTTTGATTGCTTCTTCTCTTGAACCTTAATCC
CCTTGAAACACCGGGCATTTCTCCCAGTTGTCTCTGGACCAGCTTGTGCT
TGAAAGATGTCTAAGTTTGGAGGAAATAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_g15.g1 MSMg01no483_g15.g1 CHROMAT_FILE:
MSMg01no483_g15.g1 PHD_FILE: MSMg01no483_g15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:36 2005
         (629 letters)



>mm_chr13_103417490_103418518
          Length = 1029

 Score =  571 bits (295), Expect = e-167
 Identities = 307/313 (98%), Gaps = 5/313 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtccggtccagactctggcaccccatctcctgtttagacatctctctctctctctcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 agtccggtccagactctggcaccccatctcctgtttagacatctctctctctctctcttt 250

                                                                       
Query: 61  ggtgaccacacattcatatagaattcagcttgtctaaataagacacacctatttatttat 120
           |||||||||||||||||||||||||||||||||||||||||||||||||    |||||||
Sbjct: 249 ggtgaccacacattcatatagaattcagcttgtctaaataagacacacc----tatttat 194

                                                                       
Query: 121 ttatttatttatttttaaaaatattttttattacgtattttcctcaattacatttccaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ttatttatttatttttaaaaatattttttattacgtattttcctcaattacatttccaat 134

                                                                       
Query: 181 gctatcccaaaagtcacccataccct-ccccccccactcccctacccacccattcccact 239
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 133 gctatcccaaaagtcacccataccctcccccccccactcccctacccacccattcccact 74

                                                                       
Query: 240 ttttggccctggtgttcccctgtactggggcatataaagtttgtgtgtccaatgggcctc 299
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 73  ttttggccctggtgttcccctgtactggggcatataaagtttgcgtgtccaatgggcctc 14

                        
Query: 300 tctttccagtgat 312
           |||||||||||||
Sbjct: 13  tctttccagtgat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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