Query= MSMg01no483_h22.b1 MSMg01no483_h22.b1 CHROMAT_FILE:
MSMg01no483_h22.b1 PHD_FILE: MSMg01no483_h22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:43 2005
(542 letters)
>mm_chr13_56118674_56119615
Length = 942
Score = 971 bits (502), Expect = 0.0
Identities = 533/550 (96%), Gaps = 12/550 (2%)
Strand = Plus / Minus
Query: 5 gaattccatatgtccatataaaatgttttgatcaaatcaaatccagccctaacggccccc 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gaattccatatgtgcatataaaatgttttgatcaaatcaaatccagccctaacggccccc 617
Query: 65 aatccccctccctgttctttttactctttgctgtcttctccatataacctgcatcctcgg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 aatccccctccctgttctttttactctttgctgtcttctccatataacctgcatcctcgg 557
Query: 125 gacttttgtttcatcatctatattatcattgtggtcctacatctctgagttgtacttcta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gacttttgtttcatcatctatattatcattgtggtcctacatctctgagttgtacttcta 497
Query: 185 gaacttatcttcatcacaacttaaccttcgaaaatattccattaccacactagccattta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gaacttatcttcatcacaacttaaccttcgaaaatattccattaccacactagccattta 437
Query: 245 gaaactctgtgaatgtaaagactgtcatatgtgtgtcctgtttatttatatgttcttaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gaaactctgtgaatgtaaagactgtcatatgtgtgtcctgtttatttatatgttcttaaa 377
Query: 305 gactggaaattgacacggttctttgttatttttattttacatggccagttgcctctaaag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gactggaaattgacacggttctttgttatttttattttacatggccagttgcctctaaag 317
Query: 365 accttttgaaggtacctttaactcatctttaatcatctaattacttttttcacatctgcc 424
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 agtttttgaaggtacctttaactcatctttaatcatctaattacttttttcacatctgcc 257
Query: 425 gccaaagagaaacaactttcaggaaggttagctcttagtttgaaataaaaaa----cag- 479
||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 256 gccaaagagaaacaactttcaggaaggttagctcttagtttgaaaaaaaaaaaaaacaaa 197
Query: 480 -------caagagtccatcacggctggaaaggcttggtggcagcagcagcacaaggcagt 532
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 aaaaacccaagagtccatcacggctggaaaggcttggtggcagcagcagcacaaggcagt 137
Query: 533 tgcttcccca 542
||||||||||
Sbjct: 136 tgcttcccca 127
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no483_h22.g1 MSMg01no483_h22.g1 CHROMAT_FILE:
MSMg01no483_h22.g1 PHD_FILE: MSMg01no483_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:43 2005
(454 letters)
>mm_chr13_55938053_55938906
Length = 854
Score = 870 bits (450), Expect = 0.0
Identities = 453/454 (99%)
Strand = Plus / Plus
Query: 1 aggcaaactgatagttagcccttcatacactcgcagcccgctgggtgctctagtggtgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggcaaactgatagttagcccttcatacactcgcagcccgctgggtgctctagtggtgct 260
Query: 61 ctgggaccaaatagtgctacaagaagagccttcgattccgggcggcgatagggggaccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgggaccaaatagtgctacaagaagagccttcgattccgggcggcgatagggggaccaa 320
Query: 121 tcgactgaaaccactgcttcctctgtcttccagacctagcctgtcccttcagagggccag 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 tcgactgaaaccactgcttcctctgtcttccagacctagcctgtcccttcagagggtcag 380
Query: 181 cctgtgagattagaggcgaatcaggctgtgcctgggactcctggactgagagcgacccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgtgagattagaggcgaatcaggctgtgcctgggactcctggactgagagcgacccag 440
Query: 241 gctggcttccaacttcccggggcatcagatcgagggcggctggttcgatgtaaggtgctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctggcttccaacttcccggggcatcagatcgagggcggctggttcgatgtaaggtgctg 500
Query: 301 ggggagattgcattaaagtttcatgaggtgcagtcacaggcggcgcctgcctgcctagtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggggagattgcattaaagtttcatgaggtgcagtcacaggcggcgcctgcctgcctagtt 560
Query: 361 ctagccgacagctgctgtggtggatgggtgcccgactctgctccggttcggattggtacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctagccgacagctgctgtggtggatgggtgcccgactctgctccggttcggattggtacc 620
Query: 421 tttagggccacctggcctaggaacggggagaccc 454
||||||||||||||||||||||||||||||||||
Sbjct: 621 tttagggccacctggcctaggaacggggagaccc 654
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space: 374736
Effective search space used: 374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
