Query= MSMg01no485_p13.b1 MSMg01no485_p13.b1 CHROMAT_FILE:
MSMg01no485_p13.b1 PHD_FILE: MSMg01no485_p13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:08 2005
(614 letters)
>mm_chr13_43143804_43144816
Length = 1013
Score = 1050 bits (543), Expect = 0.0
Identities = 594/611 (97%), Gaps = 3/611 (0%)
Strand = Plus / Minus
Query: 5 gaattctcccgatttgctcctacttctcacacagttcctgactctccacagagctagtcc 64
||||||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 gaattctcctgaagtgttcctacttctcacacagttcctgactctccacagagctagtcc 754
Query: 65 atcactaagatgcaaccccacgtccccatgacggtccttcaagctatgctttccttcctt 124
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 753 atcactaagatgcagccccacgtccccatgacggtccttcaagctatgctttctttcctt 694
Query: 125 ctctagactggtgttaattcaaggtacactttgtcacttgctgggtggtttgaggtgttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 ctctagactggtgttaattcaaggtacactttgtcacttgctgggtggtttgaggtgttt 634
Query: 185 tagcctgggagcaggagagcgtcagattccattagcgactgcctcaagaccagctagctg 244
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 633 tagcctgggagcaggagagtgtcagatt-cattagcgactgcctcaagaccagctagct- 576
Query: 245 c-agtcatcaccacaagaccttacctggacttcctattcatatcatctctcaaatggttc 303
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ctagtcatcaccacaagaccttacctggacttcctattcatatcatctctcaaatggttc 516
Query: 304 acaggtacagagatgcagaagggtgacctcggtcacctcagtggagcccacaccctgagc 363
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 515 acaggtacagagatgcagaagggtgaccttggtcacctcagtggagcccacaccctgagc 456
Query: 364 aatctgaagaacaatgtttctcccatcttaggtagaagaaagtggaaggagccacagaga 423
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aatctgaagaagaatgtttctcccatcttaggtagaagaaagtggaaggagccacagaga 396
Query: 424 ggcaacagaaggaattgtgtcctgaaccacaagttctttggatgtttgtgtgctggtgag 483
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ggcagcagaaggaattgtgtcctgaaccacaagttctttggatgtttgtgtgctggtgag 336
Query: 484 aaccccagctcatttttggaagacaaatgtaggaagagaaataacatgcagattggaaag 543
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 335 aaccccagctcatttttggaagacaaacgtaggaagagaaataacatgtagattggaaag 276
Query: 544 gagcccagcctcagagcagggggacgtctgtgtcatctttgccattactagcttgccaca 603
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 cagcccagcttcagagcagggggacgtctgtgtcatctttgccattactagcttgccaca 216
Query: 604 agttacttcac 614
|||||||||||
Sbjct: 215 agttacttcac 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1013
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1003
Effective search space: 605812
Effective search space used: 605812
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no485_p13.g1 MSMg01no485_p13.g1 CHROMAT_FILE:
MSMg01no485_p13.g1 PHD_FILE: MSMg01no485_p13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:08 2005
(650 letters)
>mm_chr13_42973857_42974905
Length = 1049
Score = 1218 bits (630), Expect = 0.0
Identities = 645/650 (99%), Gaps = 1/650 (0%)
Strand = Plus / Plus
Query: 1 aggcttctctaataggagccccaagcaggtatttttatgttgctgataaaaagagccaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggcttctctaataggagccccaagcaggtatttttatgttgctgataaaaagagccaaa 260
Query: 61 tgctttagattcctaatctgtctagtgcatagctgacgttcaactagaaaaatctagcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctttagattcctaatctgtctagtgcatagctgacgttcaactagaaaaatctagcaa 320
Query: 121 ccttgtctcctcccctgtgcagaggttttcctacatattcaggtgaggttcatggaaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttgtctcctcccctgtgcagaggttttcctacatattcaggtgaggttcatggaaaaa 380
Query: 181 tatgaacggaactaacacaaatcctcaaacgctaaaaagggggggggttaatatgcacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgaacggaactaacacaaatcctcaaacgctaaaaagggggggggttaatatgcacaa 440
Query: 241 atgcttatacatacattgagaactcagaactctgtattgaaagcatcaagggaaattctt 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgcttagacatacattgagaactcagaactctgtattgaaagcatcaagggaaattctt 500
Query: 301 gcagttacaaacgtttggaacagatgttgtgatccacttgtccacactgtaaaataaatg 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gc-gttacaaacgtttggaacagatgttgtgatccacttgtccacactgtaaaataaatg 559
Query: 361 caatattacatctgtggggcatagcattcctcttataactgcacactgatgcacttcctg 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 560 caatattacatctgtggggcataggattcctcttataactgcacactgatgcacttcctg 619
Query: 421 agatgaacctcttgcaaactgcaccccctaagaagctgagagtgccatctatggttgtgt 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agatgagcctcttgcaaactgcaccccctaagaagctgagagtgccatctatggttgtgt 679
Query: 481 aattaacatcactcgcttcaatattaaagagttgcctgcaaaaattcagttgtttctact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aattaacatcactcgcttcaatattaaagagttgcctgcaaaaattcagttgtttctact 739
Query: 541 ttaggctaattgaatctgaacttccctctctcacggtgtgactttttatttagtcactcc 600
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 740 ttaggctaattgaatctgaacttccctctctcatggtgtgactttttatttagtcactcc 799
Query: 601 taatttctaatgacagaaattattgtgggccagctagacgacggctcagc 650
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 taatttctaatgacagaaattattgtgggccagctagacgacggctcagc 849
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1049
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1039
Effective search space: 664960
Effective search space used: 664960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
