Query= MSMg01no486_h18.b1 MSMg01no486_h18.b1 CHROMAT_FILE:
MSMg01no486_h18.b1 PHD_FILE: MSMg01no486_h18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:48 2005
(409 letters)
>mm_chr13_59155010_59155819
Length = 810
Score = 746 bits (386), Expect = 0.0
Identities = 398/402 (99%), Gaps = 1/402 (0%)
Strand = Plus / Minus
Query: 5 taattaattacataaaatgtcaggaagcaccatcattcctgaggaagtattatttgtgct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 taattaattacataaaatgtcaggaagcaccatcattcctgaggaagtattatttgtgct 494
Query: 65 tgtgaggtctcttcctcacgggtacacaaaggtctggagctttcagagcagtctcct-aa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 493 tgtgaggtctcttcctcacgggtacacaaaggtctggagctttcagagcagtctcctaaa 434
Query: 124 ctgcatcctcattgagtttcaagggagcttatcttacgggctttaccctccttacccttg 183
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 433 ctgcatcctcattgagtttcaagggagcttatcttacaggctttaccctccttacccttg 374
Query: 184 gtcaccacggtgtctgtcagttcctagtgcctgttgacatttctgtggtactatacacac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gtcaccacggtgtctgtcagttcctagtgcctgttgacatttctgtggtactatacacac 314
Query: 244 ttctctactcagataatccttgaaaatgtttcttttccttaattttatctatgtagatgt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttctctactcagataatccttgaaaatgtttcttttccttaattttatctatgtagatgt 254
Query: 304 atttgcatagagcaataagtgcatgcatgtatgtgtgcgtttgcacccctgtgtgtttgt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 atttgcatagagcaataagtgcatgcatgtatgtgtgcgtttgcacccctgtgtgtttgt 194
Query: 364 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 405
|||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 193 gtgtttgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgt 152
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 810
Length adjustment: 9
Effective length of query: 400
Effective length of database: 801
Effective search space: 320400
Effective search space used: 320400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_h18.g1 MSMg01no486_h18.g1 CHROMAT_FILE:
MSMg01no486_h18.g1 PHD_FILE: MSMg01no486_h18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:48 2005
(576 letters)
>mm_chr13_58997251_58998225
Length = 975
Score = 1017 bits (526), Expect = 0.0
Identities = 561/578 (97%), Gaps = 11/578 (1%)
Strand = Plus / Plus
Query: 3 gcaggccagggtgctggtagtgtatttccaaggtagggcaggcaatgggagagcctttct 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gcaggccagggtgctggtagtgtatttccaaggtagggcaggcaatgggagagcctttct 262
Query: 63 tctctgttctcttggggtaagctgtcttgtgccaatagcccaccacagcactgtttagaa 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tctctgttctcttggggtaagctgtcttgtgccaatagcccaccacagcactgtttagaa 322
Query: 123 aatggctttctgtatatgcgacaccctgagtttgatccccataaaagttatctgtgctcc 182
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aatgactttctgtatatgcgacaccctgagtttgatccccataaaagttatctgtgctcc 382
Query: 183 acagacagatcttattgagtgtcagggctgataacatgcggacagacttctatcagcctc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 acagacagatcttattgagtgtcagggctgataacatgcggacagacttctatcagcctc 442
Query: 243 tttatttttt----ctcatttgaatgattcaatagtggattcaggtacggagcaatcagg 298
||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tttat-----gggcctcatttgaatgattcaatagtggattcaggtacggagcaatcagg 497
Query: 299 aactcataaaacccagccccgagctctctgtggtttctgtggggtggcagtgtcagcaca 358
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 498 aactcataaaacccagccccgagctctcagtggtttctgtagggtggcagtgtcagcaca 557
Query: 359 tctgtgggccgtaagacattgtgtttttctggatagggcttatcccatctcccctccacc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tctgtgggccgtaagacattgtgtttttctggatagggcttatcccatctcccctccacc 617
Query: 419 ccgtgtctcacagtttggtttcttactcatcttttcagagtgttgtttaggcgttcccat 478
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ccgtgtctcacggtttggtttcttactcatcttttcagagtgttgtttaggcgttcccat 677
Query: 479 tctccagggatcctttctgattcctgcaggagggaggcggttcccttacagaagatttgc 538
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tctccggggatcctttctgattcctgcaggagggaggcggttcccttacagaagatttgc 737
Query: 539 accactttgagtaattatccagaaaaaaaaatgcttag 576
|||||||||||||||||||||||||||| |||||||
Sbjct: 738 cccactttgagtaattatccagaaaaaaa--tgcttag 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 975
Length adjustment: 10
Effective length of query: 566
Effective length of database: 965
Effective search space: 546190
Effective search space used: 546190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
