NNAACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGC
GGAATTCCATAGGCAAATCCGTCACTTCTAAAATTGTAATGCAGTACAAG
TTCCAAAACAGTATTACTTTCAGGAGAGACAAGAGGAGGCAAAGTCAGTA
CTCGGTACAAAAAATACACATTACCATAAAATAAAATTTTAACTAGCCCA
GTAGATTTCTTTTCCATCTTGACTCTATGTTTTACACAATGTATATGAGA
ACTATGTATTTCCAATTTGAAAAGAAGATATTTTCCACAGACTACTAACC
CAACTATGCCTAGAACTTAAAACCAGACTTCACATATGCTCAAATAGTAA
GACACAAGTATGGTTTTTTTTCCATTTGCCACATTCAAGATTCAGTCTTC
AAACAATGTATCATCCACTGCAATGATTTTTCTGACTGAAGAAATAGCAC
CCATCCTTAGAAAGGAATGGTTATTAATGGTGTAATTTAAACAGAGCAAA
CAATACCAAGGAAAATGTAAATATGGGAACCACGGATGTGCTCTAAATTG
GCATACTGCTTACAAGCACTTAATACTTGAATAACATAACAAATATATCA
AATCTGAATGAAGAAGGTTGCTCCAGTCTATATTTCCTCCAATGATTCCT
TCCACTAGGAAAGAGCCCCATAGATGACTTGTTTCGAATACTCATCTTTA
TAAGATTGCAGCCTTAAATTAGCACAATGCCCTGGTTTTCTGCCTN

CAATACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXGCCGAAAATTCACTCTGTAGACCAGGCTGGCCTCGA
ACTAGATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGAGTGCG
CTACCCCGCTCGGCTCTGTTACTCTTTCTTGTTTCCTTTCTTCCCTCTGA
CTATTCTGGCTCCTCCTACATTCATGACATGTGTGACAAGGAAAAGAGTG
AGATGAAACATGGCATTTGTTATTATGAGTCTGGCTTATTTCACTTGGCA
CGATGAGCTCCAGTTCCACTTATTTTTTCTAGAAATGTCATGATTTGTTT
TGTCCCCCCTGTGGATCAGTAAATGTATGTGTCTGTGTATTAAATCTTTG
TTTGTTCAGTCATAGACCCCGTATTAGTTATTTTTCTATTGCTGTGAGAA
AACACCATGACCAAAAGCTACCTAGGGATAAGAGACTTTATTTTGCTTTA
TGACTCCTGGAGGACTATTGTCCGTGATGGCATCAGCTTGGTGTGATTCC
ACGCATTAGGCTCATTTTAAGCAGTGGGAATCATAGAGCTCACATTTTGT
ACCTCATTGTTTAATATGCACATTGAAAGTATGCGAGACTTTATGTACTC
ATTGTCCTCCCTTCTTGACATATGTCCTTCCTCTTTGTTGCTATCCCCCA
TCCCCCCAGACATGTTACCGTAGTTCTCATTCTCCGGATTTCTTCTGCGG
CG

Query= MSMg01no486_k05.b1 MSMg01no486_k05.b1 CHROMAT_FILE:
MSMg01no486_k05.b1 PHD_FILE: MSMg01no486_k05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:00 2005
         (662 letters)



>mm_chr13_9403739_9404803
          Length = 1065

 Score =  719 bits (372), Expect = 0.0
 Identities = 394/402 (98%), Gaps = 3/402 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattccataggcaaatc-cgtcacttctaaaattgtaatgcagtacaagttccaaaacag 59
           ||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 aattccataggcaaaacaagtcacttctaaaattgtaatgcagtacaagttccaaaacag 543

                                                                       
Query: 60  tattactttcaggagagacaagaggaggcaaagtcagtactcggtacaaaaaatacacat 119
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 542 tattactttcaggagagacaagaggaggcaaagtcagtactcgatacaaaaaatacacat 483

                                                                       
Query: 120 taccataaaataaaattttaactagcccagtagatttcttttccatcttgactctatgtt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 taccataaaataaaattttaactagcccagtagatttcttttccatcttgactctatgtt 423

                                                                       
Query: 180 ttacacaatgtatatgagaactatgtatttccaatttgaaaagaagatattttccacaga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ttacacaatgtatatgagaactatgtatttccaatttgaaaagaagatattttccacaga 363

                                                                       
Query: 240 ctactaacccaactatgcctagaacttaaaaccagacttcacatatgctcaaatagtaag 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ctactaacccaactatgcctagaacttaaaaccagacttcacatatgctcaaatagtaag 303

                                                                       
Query: 300 acacaagtatggttt--tttttccatttgccacattcaagattcagtcttcaaacaatgt 357
           ||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 acacaagtatgttttattttttccatttgccacattcaagattcagtcttcaaacaatgt 243

                                                     
Query: 358 atcatccactgcaatgatttttctgactgaagaaatagcacc 399
           |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 242 atcatccaatgcaatgatttttctgactgaagaaatagcacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1065
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1055
Effective search space:   687860
Effective search space used:   687860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)