Query= MSMg01no487_a01.b1 MSMg01no487_a01.b1 CHROMAT_FILE:
MSMg01no487_a01.b1 PHD_FILE: MSMg01no487_a01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:28 2005
(597 letters)
>mm_chr13_31941949_31942945
Length = 997
Score = 774 bits (400), Expect = 0.0
Identities = 425/436 (97%), Gaps = 7/436 (1%)
Strand = Plus / Minus
Query: 169 ttttattctgttttggatttgtttggg--attttgttg-ttgtttg----tttgtttgtt 221
||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||
Sbjct: 996 ttttattctgttttggatttgtttggggttttttgttgtttgtttgtttatttgtttgtt 937
Query: 222 ttcaagacagggtttctctttgtaaccctggctgtcctggaactcactctgtaaaccagg 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 ttcaagacagggtttctctttgtaaccctggctgtcctggaactcactctgtaaaccagg 877
Query: 282 ctagcctcaaactcagagatccacctacctctgcctcccaagtgctgggattaaagtcat 341
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 876 ctagcctcaaactcagagatccacctacctctgcctcccaaatgctgggattaaagtcat 817
Query: 342 gtgccaccactgcctagcttccttgggtgcttttaaccagtagcttagttagtgacaatt 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 gtgccaccactgcctagcttccttgggtgcttttaaccagtagcttagttagtgacaatt 757
Query: 402 tatgcaaacagagttttcatgcctcaagacactccaagcctggcgccttgggtacctcat 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 tatgcaaacagagttttcatgcctcaagacactccaagcctggcgccttgggtacctcat 697
Query: 462 gtatttgaggaaagctgagcagtttggtttcaaatttgtgttcgtatatggtgctagaag 521
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 696 gtatttgaggaaagctgagcagtttggtttcgaatttgtgttcgtatatggtgctagaag 637
Query: 522 gtgaacctagccttgtgcatgttagacacatattctaccactaaaatttatccccaggcc 581
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 636 gtgaacctagccttgtgcatgttaaacacatattctaccactaaaatttatccccaggcc 577
Query: 582 ttaaaaaaaattctta 597
||||||||||||||||
Sbjct: 576 ttaaaaaaaattctta 561
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space: 579369
Effective search space used: 579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no487_a01.g1 MSMg01no487_a01.g1 CHROMAT_FILE:
MSMg01no487_a01.g1 PHD_FILE: MSMg01no487_a01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:29 2005
(634 letters)
>mm_chr13_31780951_31781984
Length = 1034
Score = 1110 bits (574), Expect = 0.0
Identities = 619/634 (97%)
Strand = Plus / Plus
Query: 1 aaagaagcagaatccatggatgtgaatgcctgactgtagtcactaatttcattaaatttg 60
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 201 aaagaagcagaatccatggatgtgaatgcctgactatagtcactaatttcattaaacttg 260
Query: 61 ggctcattaccccccttccttaggatgttgtatgcattggatatagagtgctgaccaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggctcattaccccccttccttaggatgttgtatgcattggatatagagtgctgaccaagc 320
Query: 121 ccaatgttatggtcatttatgcttcctggggatataggttcccagaagaaccagaacctt 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 ccaatgttatggtcatttatgcttcctggggatatagattcccagaagaaccagaacctt 380
Query: 181 ctagcacagttgttcttggatggtctgcacagcaaacaatgtgctgctgcccccagtggt 240
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 ctagcacagctgttcttggatggtctgcacagaaaacaatgtgctgctgcccccagtggt 440
Query: 241 cacgttttatattacatcatgctcagaggcctctggctccttcccagtcatagaaggaac 300
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 cacgttttacattacatcatgctcagaggcctctggctccttcctagtcatagaaggaac 500
Query: 301 taccaggcgggcattgacctctgagatagtgttctggtaaacaaagagtggtcatctcat 360
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 taccaggtgggcattgacctctgagatagtgttctggtaaacaaagagtggtcatctctt 560
Query: 361 cttgaccatgctatgctctaaagcatagagaaggacactggggtcttgagtgagatagct 420
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttgaccatgctatgccctaaagcatagagaaggacactggggtcttgagtgagatagct 620
Query: 421 ctgtatgaatattgttttagtctaatgggaattactataacagaatacctgagactgttt 480
| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 621 ccatatgaatattgttttagtctgatgggaattgctataacagaatacctgagactgttt 680
Query: 481 aatttatagggcagaggtttacttttttcagtcctgaagactatcaattcaaagaccaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatttatagggcagaggtttacttttttcagtcctgaagactatcaattcaaagaccaag 740
Query: 541 ggccaagtctagcaaagggctccttactatatcttgcaatggaggaaggtgtcgcgtaac 600
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 741 ggccaagtctagcaaagggctccttactatatcatgcaatggaggaaggtgtcgcgtaac 800
Query: 601 tcatacctcccaatatggtcacatgggagctaag 634
||||||||||||||||||||||||||||||||||
Sbjct: 801 tcatacctcccaatatggtcacatgggagctaag 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
