CACCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTCTGTCTTCCTCAATGTAACTGTGGTACACAGCTATGTT
TGAGAACAACTAATCTAGTAGCTTTTAGTTTTAGCATCTTATTGCCTTGT
AATTTTAGAACAAGGCCACCTTAGAAAGTATAGCAGATAGTAATTGTATT
AAGGTACTTTATTCATTTAAAGTTAGGAAACATTTTATTGCTTGTGTGAA
GAACACGGGGCTAGCTGGATAAGATGATGTTAAAATTGGCCATTAAGACT
CAGTAGAGATATAGGTAAGTTCAGGTTTGCTTGGATTTTAATATAACTTA
ATGCTTGCAATATATATATGGCAGCAGGAGCAGTGACCTGTTTGATACAA
TGGACCCTAGTCCTAGTTTTCTTTTTGCTCTCCAAGTTGTTTTCCTTTTG
TTGATGAAATATTTTATGGCTTCAGTTTGCTTTCTGAAAGTGCAGCATGT
GGTCAGGTTGGGCATCAGAAGGTTTCTCCATGAAATAAAAGAGCACAACT
TTCCTCAAGCCTCTAGGGGCTGTGCCCTTGTGATTCACTTAAGCTAGTCC
CGATTGGACTTCTGGTTAGATACAAAGACTATCAGGACCACTATGTTATT
TAAAATAATAGATTTACTGCAGAATTATTATTATTAAAGCATAGTTGGCT
TTTTTGTTTAGATGACACCATATAAAGGCAACATTCTGAGTAAATTACN

NCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACCCCTGAGTTTGATTATTTCCTGCT
GTCTACTCCTCCTGGCTGAATTTGCTTCCTTTTTTCTAGAGCTTTTAGAG
GTGTTGTCAAGCTGCTAGTATGTGCTCTCTCCCTTTTCTTCTTGGAGGCA
CTCAGAGCTATGAGTTTCCCTCTTAGAAATGCTTTCATTGTGTCCCATAG
GTTTGGGTATGTTGTGGCTTCATTTTCGAAAATTAAACTCTAAAAAGTCT
TTAATTTCTTTCTTTATTCCTTCCTTGACCAAGGTATCATTGAGAAGAGT
GTTGTTCAGTTTCCACGTGAATGTTGGCTTTCCATTATTTATGTTGTTAT
TGAAGATCAGTCTTAGGCCATGGTGGTCTGATAGGATACATGGGATAATT
TCAATATTTTTGTATCTGTTGAGGCCTGTTTTGTGACCAATTATATGGTC
AATTTTGGAGAAGGTCCCGTGAGGTGCTGAGAAGAAGGTATATCCTTTTG
TTTTAGGATAAAATGTTCTGTAGATATCTGTCAGGTCCATTTGTTTCATA
ACTTCTGTTAGTTTCACTGTGTCCCTGTTTAGTTTCTGTTTCCACAATCT
GTCCATTGATGAAAGTGGTGTGTTGAAGTCTCCAACTATTATTGTGTGAG
GTGCAATGTGTGCTTTGAGCTTTTCTAAAGTGTCTTTAATGAN

Query= MSMg01no487_n06.b1 MSMg01no487_n06.b1 CHROMAT_FILE:
MSMg01no487_n06.b1 PHD_FILE: MSMg01no487_n06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:33 2005
         (639 letters)



>mm_chr13_17547296_17548334
          Length = 1039

 Score = 1160 bits (600), Expect = 0.0
 Identities = 627/638 (98%), Gaps = 5/638 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctctgtcttcct---caatgtaactgtggtacacagctatgtttgagaacaact 61
           |||||||||||||  |||   |||||||||||||||||||||||||||||||||||||||
Sbjct: 858 gaattcctctgtc--cctttacaatgtaactgtggtacacagctatgtttgagaacaact 801

                                                                       
Query: 62  aatctagtagcttttagttttagcatcttattgccttgtaattttagaacaaggccacct 121
           |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 800 aatctagtagcttttagttttagcatcttattgctttgtaattttagaataaggccacct 741

                                                                       
Query: 122 tagaaagtatagcagatagtaattgtattaaggtactttattcatttaaagttaggaaac 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tagaaagtatagcagatagtaattgtattaaggtactttattcatttaaagttaggaaac 681

                                                                       
Query: 182 attttattgcttgtgtgaagaacacggggctagctggataagatgatgttaaaattggcc 241
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 680 attttattgcttgtgtgaagaacaaggggctagctggataagatgatgttaaaattggcc 621

                                                                       
Query: 242 attaagactcagtagagatataggtaagttcaggtttgcttggattttaatataacttaa 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 attaagactcagtagagatataggtaagttcaggtttgcttggattttaatataacttaa 561

                                                                       
Query: 302 tgcttgcaatatatatatggcagcaggagcagtgacctgtttgatacaatggaccctagt 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgcttgcaatatatatatggcagcaggagcagtgacctgtttgatacaatggaccctagt 501

                                                                       
Query: 362 cctagttttctttttgctctccaagttgttttccttttgttgatgaaatattttatggct 421
           ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 500 cctagttttctttttgctctcaaagttgttttccttttgtcgatgaaatattttatggct 441

                                                                       
Query: 422 tcagtttgctttctgaaagtgcagcatgtggtcaggttgggcatcagaaggtttctccat 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tcagtttgctttctgaaagtgcagcatgtggtcaggttgggcatcagaaggtttctccat 381

                                                                       
Query: 482 gaaataaaagagcacaactttcctcaagcctctaggggctgtgcccttgtgattcactta 541
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gaaataaaagaacacaactttcctcaagcctctaggggctgtgcccttgtgattcactta 321

                                                                       
Query: 542 agctagtcccgattggacttctggttagatacaaagactatcaggaccactatgttattt 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agctagtcccgattggacttctggttagatacaaagactatcaggaccactatgttattt 261

                                                 
Query: 602 aaaataatagatttactgcagaattattattattaaag 639
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaaataatagatttactgcagaattattattattaaag 223


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)