BAC Information

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BAC

Clone NameMSMg01-488G23
Chromosome13 (Build37)
Map Location 67,007,250 - 67,171,283
singlet/doubletdoublet
Overlap geneMterfd1, Ptdss1, Zfp712, Zfp708
Upstream geneEG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb
Downstream geneZfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488G23.T7 (MSMg01no488_g23.b1)MSMg01-488G23.TJ (MSMg01no488_g23.g1)
ACCAG567159AG567160
length780749
length of high quality
(start - end)		648 (67 - 714)463 (60 - 522)
definitionCHROMAT_FILE: MSMg01no488_g23.b1 PHD_FILE: MSMg01no488_g23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:21 2005CHROMAT_FILE: MSMg01no488_g23.g1 PHD_FILE: MSMg01no488_g23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,170,636 - 67,171,283)(67,007,250 - 67,007,712)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACTGTTCCAGAGACCCTACAAATGTGAAGTTTGTGGCAAGGCCT
TTACTTCTTCTTCAAATCTTAAATATCATTGGAGACTTCATACTGGCGAG
AAGCCCTATAAATGTGAACAATGTGGTAAAGCCTTTAAAAATAGTTCAAA
TGTCACTCGACACTACAAAATTCATACTAGAGAAAATCCAGATTAATGCA
AACACTTTTGTAAAGCCTTCCACAGTTGTTCATTGACAATTCAGCACTAA
AGAATTCATATAAAAGAAAAACCTTAGAAATGAAAGAAATAAGGAAAAAC
CTTTAATAATAGTTCAACCCATATTCAACATCCACCATTACATACTGGAG
AGATCTTGTAATAGTGAAGAAGATGGCCGTGTTGAGCGTTCAATACTTAT
GGAGCATCAAATTTTTTAGAGAAACACTACAAATGCAGGTAATACAGGAA
CTGCTCATTAACCATGAGTGATTTATAACCAGATGTTATACATGCAAAAT
GACTTTGGAAGGAACACTGACAAATACATAAAACTGAGAAAACCAAACTG
GTTCAGTAAAAAGCACTTTGTAAACAGTGTTGCAACACTTTGCTCATCAT
GTAAATCTTGAGAGATTGGAGAGAATTATCTATCATAAGAGACAAATTCC
AGGAGCTGTATAGGATTTAGCAAGCCACCAAGTGCTGCTCTGAATTCCTA
AAGAAATTATACAGAACTCTGAACTCACTA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXAGTAGTCTGAGGCAGGAGGATCCCTGCAAGTTCAAGACTAC
AGTTGTCTACATAGTGAATCTGGCATCAGTCTGCAAGACCTTACCTAAAA
CAAAACAACAACAACAAAACCCCTAAGATATATTTAGAATTTGCATATAG
TATTAAAAATGGAGCAAGCAGAAAGACTATAGACTGTGCTTTCAAGATCT
CAACCCCAACAGGTAGAGTCTAAAATAAAAAACTAAGGACAGAAAGTGGA
GTTACTGTTGAGTTTTACTATGACTCGATAGTGGTCTTTTTTTTTTTTTT
TTTTGAGGTAGATACTATTTATTATTTCTTGGTTTCCCTCTCATTGACAT
CAACTATCTTTTCTGAATTTTGGACTGGATTTAATGTCAAAAATACAGAA
ATGAGCTGGGCAGTGGTGGTGCACGCCTTTAATCCCAGCACTTGGGAGCC
AGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTTTACAAAGTGAG
TTCCAGGACAGCCAGCAGGGCTATACAGAAAAACCCTGTCTCAAAAAAAA
AAAAAAAACAAAACCAAAAAAACCAACCAAAAAAAAAACAGAAATGTNGA
CAAAATTATTCAGGTATAAAGCCAGTGTTCTGAATCCATACAAAATTATT
TGCTGATACATAGCTCAAATATTAACAGGGGGACTTTATTTAAGCTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_g23.b1 MSMg01no488_g23.b1 CHROMAT_FILE:
MSMg01no488_g23.b1 PHD_FILE: MSMg01no488_g23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:21 2005
         (648 letters)



>mm_chr13_67170436_67171483
          Length = 1048

 Score = 1253 bits (648), Expect = 0.0
 Identities = 648/648 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaccctacaaatgtgaagtttgtggcaaggcctttacttcttcttcaaatcttaaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 agaccctacaaatgtgaagtttgtggcaaggcctttacttcttcttcaaatcttaaatat 789

                                                                       
Query: 61  cattggagacttcatactggcgagaagccctataaatgtgaacaatgtggtaaagccttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 cattggagacttcatactggcgagaagccctataaatgtgaacaatgtggtaaagccttt 729

                                                                       
Query: 121 aaaaatagttcaaatgtcactcgacactacaaaattcatactagagaaaatccagattaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 aaaaatagttcaaatgtcactcgacactacaaaattcatactagagaaaatccagattaa 669

                                                                       
Query: 181 tgcaaacacttttgtaaagccttccacagttgttcattgacaattcagcactaaagaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tgcaaacacttttgtaaagccttccacagttgttcattgacaattcagcactaaagaatt 609

                                                                       
Query: 241 catataaaagaaaaaccttagaaatgaaagaaataaggaaaaacctttaataatagttca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 catataaaagaaaaaccttagaaatgaaagaaataaggaaaaacctttaataatagttca 549

                                                                       
Query: 301 acccatattcaacatccaccattacatactggagagatcttgtaatagtgaagaagatgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 acccatattcaacatccaccattacatactggagagatcttgtaatagtgaagaagatgg 489

                                                                       
Query: 361 ccgtgttgagcgttcaatacttatggagcatcaaattttttagagaaacactacaaatgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ccgtgttgagcgttcaatacttatggagcatcaaattttttagagaaacactacaaatgc 429

                                                                       
Query: 421 aggtaatacaggaactgctcattaaccatgagtgatttataaccagatgttatacatgca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aggtaatacaggaactgctcattaaccatgagtgatttataaccagatgttatacatgca 369

                                                                       
Query: 481 aaatgactttggaaggaacactgacaaatacataaaactgagaaaaccaaactggttcag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaatgactttggaaggaacactgacaaatacataaaactgagaaaaccaaactggttcag 309

                                                                       
Query: 541 taaaaagcactttgtaaacagtgttgcaacactttgctcatcatgtaaatcttgagagat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 taaaaagcactttgtaaacagtgttgcaacactttgctcatcatgtaaatcttgagagat 249

                                                           
Query: 601 tggagagaattatctatcataagagacaaattccaggagctgtatagg 648
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tggagagaattatctatcataagagacaaattccaggagctgtatagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no488_g23.g1 MSMg01no488_g23.g1 CHROMAT_FILE:
MSMg01no488_g23.g1 PHD_FILE: MSMg01no488_g23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:21 2005
         (463 letters)



>mm_chr13_67007050_67007912
          Length = 863

 Score =  895 bits (463), Expect = 0.0
 Identities = 463/463 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtagtctgaggcaggaggatccctgcaagttcaagactacagttgtctacatagtgaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtagtctgaggcaggaggatccctgcaagttcaagactacagttgtctacatagtgaat 260

                                                                       
Query: 61  ctggcatcagtctgcaagaccttacctaaaacaaaacaacaacaacaaaacccctaagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggcatcagtctgcaagaccttacctaaaacaaaacaacaacaacaaaacccctaagat 320

                                                                       
Query: 121 atatttagaatttgcatatagtattaaaaatggagcaagcagaaagactatagactgtgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatttagaatttgcatatagtattaaaaatggagcaagcagaaagactatagactgtgc 380

                                                                       
Query: 181 tttcaagatctcaaccccaacaggtagagtctaaaataaaaaactaaggacagaaagtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcaagatctcaaccccaacaggtagagtctaaaataaaaaactaaggacagaaagtgg 440

                                                                       
Query: 241 agttactgttgagttttactatgactcgatagtggtcttttttttttttttttttgaggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agttactgttgagttttactatgactcgatagtggtcttttttttttttttttttgaggt 500

                                                                       
Query: 301 agatactatttattatttcttggtttccctctcattgacatcaactatcttttctgaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agatactatttattatttcttggtttccctctcattgacatcaactatcttttctgaatt 560

                                                                       
Query: 361 ttggactggatttaatgtcaaaaatacagaaatgagctgggcagtggtggtgcacgcctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttggactggatttaatgtcaaaaatacagaaatgagctgggcagtggtggtgcacgcctt 620

                                                      
Query: 421 taatcccagcacttgggagccagaggcaggcagatttctgagt 463
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taatcccagcacttgggagccagaggcaggcagatttctgagt 663


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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