BAC Information

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BAC

Clone NameMSMg01-489G15
Chromosome13 (Build37)
Map Location 29,049,388 - 29,049,977
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041036, Prl4a1, Prl5a1, LOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1, LOC626683, 2610307P16Rik, Sox4
Downstream geneLOC100041135, Cdkal1, E2f3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489G15.T7 (MSMg01no489_g15.b1)MSMg01-489G15.TJ (MSMg01no489_g15.g1)
ACCAG567903AG567904
length1,359776
length of high quality
(start - end)
---592 (76 - 667)
definitionCHROMAT_FILE: MSMg01no489_g15.b1 PHD_FILE: MSMg01no489_g15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:38 2005CHROMAT_FILE: MSMg01no489_g15.g1 PHD_FILE: MSMg01no489_g15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCTACTCACATCTATATATTTATTCCATTTGTGAGGAGGGGTGGATTA
TTTCACAAAAAAAAAGAGAGACGGGGACAGCGCGATTTCGGGGTTTTCTC
CCCTAAAAAAATGAGGGAGAGTCNTCTCCCACACATAAAACCCGCCACTA
CACGCTACCGAGCTCTATGTATTGCCATATGCTCGAACGAGACACCCATA
TAAGCATGTTAGTTCCTAATTTATCTCACGTTCTATGTAGACATTAGCCC
ATCGTATGACTTCAATCACGCCTTTAACGCACCCACGCTGTGATGATTTT
TCGCGCGGGGATATGACTTCGTACACGAGCGNACGTCGGCCTTCAATGTA
TATTTAGCGGCGTCACGGGGCGTGGTTAATCTGATAAGAAGGATAAAGTA
ACTTTATCCATATCTTTACTTGCCTCACGATATGACGCAACATTATAATC
GGTTTGAATTTTACGGCATGCTAATATAATCTAGACGTGTGAGTCAAAAT
ATCACAAAGGTGAAGCTCAAGTGAAGAGGGAGAAATCGGTATATCCAGTT
CGGGTTGTGAGTATGTAACGGATNTGCATTAACAGTATTTCCGCACCGTT
GCGCGATTCTTGCATAACGTTAATAACATACGCGTCGTTATCATAACCGT
ATAGTCAGTATATGATAAAACAGTCAAGAAATGGATGTGGCGGGAGATGA
GTGAGGGGGGGTGACACCACCCACCCCACACTGCGCGTGCTGTATAGCTT
AGCGGGACATAGCGGTCTATTACTCTAATATGAGTCGATATATGCTTAAA
TAATCGCTACCCAGTACACCCCCCCACACGTACTTTACTCTGCTTGTAGT
TATATCATGTCCTGCGCTATACATGGTGCGCACGATAGATATATAGTATC
ATATTTATAGTATATCCTCACCACGACAAGTTAAAGCAACACATTATGTA
TTACTATGTGAAGACGGTTATTAGACAGATTGATGAGCCCGATGGCAACG
ATAGATAAAGCGGTGATTATGAGTGAAGTACTTGATTTGGCCTATAGCAA
GTACACAGACGATATACGACATATGGTAAGCGTNGCAGCCACGCGGATTA
TTACCGAGCATATTAGTTTGCCGCGCTGGGAGGCGCAAACACAGACAGAC
AGGGGCGCTACGTCGTATACACCGGCTCACGCTTNCAACAACCGCTCATC
GCTACAACATCAATAATTACGATAACGTTATATAATTTACCCGACCGCAC
GCCCACATCTATATACTAACGATCTCTCACACATAGCGTCTCTCATCACT
ATTATATTATTAACACCATACGCGCTACTCTTACATTGACCACGATTCAC
AACTATGAT
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACCAGCACACCCACCGGTCCTTGAA
ACCCGGAGAAGGGTTGGGGGTTCACTGGTTCAGGAGACCAGGAAGGGACG
GTTGGATCTTCCCCCACGTTTTCCCACGTCGCTGCATGCTCAGGCAGGCT
CAGCGCTGCCACCTGGCGGCTGCCTCTCCCGGATTGGGAGGAGCTGTCTG
CACGCACCAGTTCCACAGATCTTGAAGGGTGTGCCAGGCCTCTATCTGGG
GAAAGAGGGCAGAAGCTTTTTTTAATGCTTCCTATCTATGTGGCCCGTGC
AGACACACTTGTTTTCTGCTTGTTCTCAAGAGTAAGAGGGAAATCCGTTG
GCGTTGAACGGCATGGGTATAAAGAGCTGACTTGAGCCTGCTGGTTATGA
GGGGTGAGAAAGTGGTGAAATTATTAGAAATATATGTTTCTTATCTCTGT
GTAGTCTAACAGTGAATATGAACGACAGCTTTCATTTATCCTGCTTAATA
TTTTTCGAATAAGAATTCAACACACTGGTCTGGAGAGATAACTCAGCCCT
TGATAAAGGCTAAGGCTCACAACCAAAACCTAAAAAATACTGTTTCAATA
CAGCCCCCCTTTCCTAGTCCAGNTTCAATACAACTTCCTCAGCACCAAGA
ATGGAGTAGTGCAAGGGGTTGGGGGGGTGGGGAACAAAAACAAGCCCACC
GAAAGGTTTTACCGAAAACAGGGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_g15.g1 MSMg01no489_g15.g1 CHROMAT_FILE:
MSMg01no489_g15.g1 PHD_FILE: MSMg01no489_g15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:38 2005
         (592 letters)



>mm_chr13_29049188_29050177
          Length = 990

 Score = 1079 bits (558), Expect = 0.0
 Identities = 583/596 (97%), Gaps = 10/596 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   accagcacacccaccggtccttgaaacccggagaagggttgggggttcactggttcagga 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 790 accagcacacccaccggtccttgaaacccggagaagtgttgggggttcactggttcagga 731

                                                                       
Query: 61  gaccaggaagggacggttggatcttcccccacgttttcccacgtcgctgcatgctcaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 gaccaggaagggacggttggatcttcccccacgttttcccacgtcgctgcatgctcaggc 671

                                                                       
Query: 121 aggctcagcgctgccacctggcggctgcctctcccggattgggaggagctgtctgcacgc 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 670 aggctcagcgctgccacctggcggctgcctctcccggactgggaggagctgtctgcacgc 611

                                                                       
Query: 181 accagttccacagatcttgaagggtgtgccaggcctctatctggggaaagagggcagaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 610 accagttccacagatcttgaagggtgtgccaggcctctatctggggaa--agggcagaag 553

                                                                       
Query: 241 cttttt----ttaatgcttcctatctatgtggcccgtgcagacacacttgttttctgctt 296
           |    |    ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 c----tccagttaatgcttcctatctatgtggcccgtgcagacacacttgttttctgctt 497

                                                                       
Query: 297 gttctcaagagtaagagggaaatccgttggcgttgaacggcatgggtataaagagctgac 356
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 496 gttctcaagagtaagagggaaatgcgttggcgttgaacggcatgggtataaagagctgac 437

                                                                       
Query: 357 ttgagcctgctggttatgaggggtgagaaagtggtgaaattattagaaatatatgtttct 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ttgagcctgctggttatgaggggtgagaaagtggtgaaattattagaaatatatgtttct 377

                                                                       
Query: 417 tatctctgtgtagtctaacagtgaatatgaacgacagctttcatttatcctgcttaatat 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tatctctgtgtagtctaacagtgaatatgaacgacagctttcatttatcctgcttaatat 317

                                                                       
Query: 477 ttttcgaataagaattcaacacactggtctggagagataactcagcccttgataaaggct 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ttttcgaataagaattcaacacactggtctggagagataactcagcccttgataaaggct 257

                                                                   
Query: 537 aaggctcacaaccaaaacctaaaaaatactgtttcaatacagcccccctttcctag 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aaggctcacaaccaaaacctaaaaaatactgtttcaatacagcccccctttcctag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 990
Length adjustment: 10
Effective length of query: 582
Effective length of database: 980
Effective search space:   570360
Effective search space used:   570360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)