BAC Information

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BAC

Clone NameMSMg01-490I02
Chromosome13 (Build37)
Map Location 104,044,333 - 104,044,975
singlet/doubletsinglet
Overlap geneMast4
Upstream geneCd180, EG621312
Downstream geneEG432800, LOC432801, LOC100040045, Ppia-ps13_1282.1, Sfrs12, Erbb2ip, LOC100040086, D130037M23Rik, Nln, Sgtb, 2410002O22Rik, LOC100040518, Trim23, Ppwd1, Cenpk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490I02.T7 (MSMg01no490_i02.b1)MSMg01-490I02.TJ (MSMg01no490_i02.g1)
ACCAG568725AG568726
length754723
length of high quality
(start - end)
643 (79 - 721)556 (81 - 636)
definitionCHROMAT_FILE: MSMg01no490_i02.b1 PHD_FILE: MSMg01no490_i02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:07 2005CHROMAT_FILE: MSMg01no490_i02.g1 PHD_FILE: MSMg01no490_i02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXGATCGAAAAGAGGGGC
GGAAGTCTGGCTCTTGCTCAAAATGGCAGAGATCTTGTTGGCTCATAATT
CTTCTTATCAGCACACTCACTAACTGTTCCTGCTTAATTTCAAAAGCAGA
TTAGATGAACCCTCTCCTGATAGTGCCAGCCAATTCATTAAGGAGTCAGT
CTTCCTTCCTTTAAATGCCTAAAGACACCCCATACAGTACTAGTACCCAT
CTTCAATATAGTTGTGACTTGCATGTGAGACTTGGTCTTTCTACTATTAA
AAATAATAATTTTGTTTCATCTTTTAATTGAGGGCAAGTCTCACCTGTTA
TGAATGGCTATAGTTAACGATACTGACTCACCATGGAAAACTCTTCCTTC
CATATGACCACTGCAATGAACATCTATCACTCCTCCAAGTATCTAGTATT
TGTGCACCCTTCCTATGCCTATGGGATAGATGTTGTGGGGATATGAGATC
TTCACCTTCTATTAGGGAAGAAAAAAGGAATCCAAAAATATGCATGGCCT
TTCCAAGGCCAAGGAGCATGAGCTCAGCAAATGGTCATGTTTTTCAAAGC
CTCTGGATTTAGAGGAAGGCCATAGGTAATCTGGTAGAGTCAATAACAGA
AGTGAATGCCAACAAGAAGAGACCCCATTTCCTGGGCATGGGCTGGCATC
TTCTAAGCTCTGCAGCTTCCCTGAGAGCCTAGGACTCCCTGAATTTCTAG
TCAA
TGTTTTTCCACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTCGTCAAAATTCCTGATCTTTCCAAAAC
TTTTATCATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTA
ACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATT
ACATTGATGGATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAA
ACCTACTTGGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGT
TAGCGAGAATTTTATTGAGGATTTTTGCTTTTATATTCATAAGAGAAATT
GGTCTGAAGTTCTCTATCTTTGTTGGGTCTTTCTGTGGTTTAGGTATCAG
AGTAATAGTGGCTTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTA
TTTTGTGAAATAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTC
TGATAGAACTCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGG
GAGACTATTAATAACTGCTTCTATTTCTTTAGGTGATATGGGACTGTTTA
GATGATCAACTTGATCCTGATTCAACTTTGGTACCTGGAATCTGTCCAGA
AATTTGTCCATTTCGTCCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTT
GTAGAAGGATCTGATGGTGTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_i02.b1 MSMg01no490_i02.b1 CHROMAT_FILE:
MSMg01no490_i02.b1 PHD_FILE: MSMg01no490_i02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:07 2005
         (643 letters)



>mm_chr13_104044133_104045175
          Length = 1043

 Score = 1112 bits (575), Expect = 0.0
 Identities = 626/643 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagatcttgttggctcataattcttcttatcagcacactcactaactgttcctgcttaat 60
           |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 201 gagatcttgttggctcataattcttcttatcagcacactcactaaccgtccctgcttaat 260

                                                                       
Query: 61  ttcaaaagcagattagatgaaccctctcctgatagtgccagccaattcattaaggagtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcaaaagcagattagatgaaccctctcctgatagtgccagccaattcattaaggagtca 320

                                                                       
Query: 121 gtcttccttcctttaaatgcctaaagacaccccatacagtactagtacccatcttcaata 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 321 gtcttccttcctttaaatgcctaaagacatcccatacagtactagtacccagcttcaata 380

                                                                       
Query: 181 tagttgtgacttgcatgtgagacttggtctttctactattaaaaataataattttgtttc 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagttgtgacttgtatgtgagacttggtctttctactattaaaaataataattttgtttc 440

                                                                       
Query: 241 atcttttaattgagggcaagtctcacctgttatgaatggctatagttaacgatactgact 300
           |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 441 atcttttaattgagggtaagtctcacctgttatgaatggctatagttaatgatactggct 500

                                                                       
Query: 301 caccatggaaaactcttccttccatatgaccactgcaatgaacatctatcactcctccaa 360
           | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 ccccatggaaaactcttccttccatatgaccactgcaattaacatctatcactcctccaa 560

                                                                       
Query: 361 gtatctagtatttgtgcacccttcctatgcctatgggatagatgttgtggggatatgaga 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 gtatctagtatttgtgcacccttcctatgcctatgggatagatgttgtggggatgtgaga 620

                                                                       
Query: 421 tcttcaccttctattagggaagaaaaaaggaatccaaaaatatgcatggcctttccaagg 480
           ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 621 tcttcaccttctattagggaagaaagaaggaatccaaaaatatgcatgacctttccaagg 680

                                                                       
Query: 481 ccaaggagcatgagctcagcaaatggtcatgtttttcaaagcctctggatttagaggaag 540
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccaaggagcatgagctcagcaaacggtcatgtttttcaaagcctctggatttagaggaag 740

                                                                       
Query: 541 gccataggtaatctggtagagtcaataacagaagtgaatgccaacaagaagagaccccat 600
           ||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||
Sbjct: 741 gccataggtaatctggtagagtcaataacagaagcaaatgccaacgagaagagaccccat 800

                                                      
Query: 601 ttcctgggcatgggctggcatcttctaagctctgcagcttccc 643
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttcctgggcatgggctggcatcttctaagctctgcagcttccc 843


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space:   653889
Effective search space used:   653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)