BAC Information

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BAC

Clone NameMSMg01-490K20
Chromosome13 (Build37)
Map Location 19,932,746 - 19,933,393
singlet/doubletsinglet
Overlap genenone
Upstream geneVps41, Amph, LOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141
Downstream geneLOC432730, Elmo1, LOC100040226, LOC665381, LOC665386, Aoah
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490K20.T7 (MSMg01no490_k20.b1)MSMg01-490K20.TJ (MSMg01no490_k20.g1)
ACCAG568854AG568855
length740767
length of high quality
(start - end)
216 (423 - 638)644 (74 - 717)
definitionCHROMAT_FILE: MSMg01no490_k20.b1 PHD_FILE: MSMg01no490_k20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:20 2005CHROMAT_FILE: MSMg01no490_k20.g1 PHD_FILE: MSMg01no490_k20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAAAATCTAAAATTGCGGCCGCGAAANGAATCACCATTCGTACCGAGGC
GNGGAATTCACTCTTTACAAAAAAAGGGNCTCGAACTTAGAAATCCACCT
GCCTCTGCCTCTCAAGTGCTGGGATTAAAGGTATGCATCACCACTGACCG
TCTCACAAGGATTTTTCGCATAAAAATCTTTTCAAGTCATACCACTGTCA
GGCCAGTAGGGGAGATATTTAGTCTCTGTTTGCAAGTCTCTGGTAAGGTT
TATAGAAAGCAGCTAGATCACCAAAGGACTTAATTACCTTAAAGAACTAG
TGTATCAGAACTGCTTTTCATANTGTCCCACTTATTCTGACTTAGTTAAG
TGAGATAGGCTCACATAGAGACAATAAGATGCTCACAGAGGGGCTGGTGA
CATGGCTCAGTGGGTACCACCACCCGACTGCTCTTCCGAAGGTCCGAAGT
TCAAATCCCAGCAACCACATGGTGGCTCACAACCACCCGTAATGAGATCT
GATGCCCTCTTCTGGTGCGTCTGAAGACAGCTACAGTGTACTTACATATA
ATAAATAAATAAATAAATAAATCTTTAAAAAAAAAAGATGCTCACAGAAT
CCCACTGATAGAGAAGAATATGGGTAGCAGGACAAGGGTGAACTATTTTT
TCTCATTAGGAGTAAAGCACATGAACTCTTCCTGACGCTAGCTATTAATA
ATTAATGCAAAACGATCACCCACTTTGGCTTCAGTGGGTG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCCCGAAATACCATGTATTTTTGTTCTTTTAATTTTGTC
ACCATAACAATTTTATGGGCATGAATCATTAGTCTCATTTTATAAATAAG
GAAACAAACTAAAAAAAATGTGATAGTATATCCAGAACACCATTAACAAA
CATGTAACTTGGTATTATTTTTCCAGTCATACTAATTATATTTACAATCC
AATTATCTAATATTTATTGAATCAATGCTGTCTTATGTTGTACTTGGCAC
CCCTGGAAGACAGTGGTTTCTTGTGTTCATTAGGTGTGTTCTTTAACATG
TCCTGTAAGTATGACCGTCTGAATGGTGCTAATAAGAGCTATCTTCTCAG
GTCTTTACCCTTTTCCCCCCTGAGCCAACTGAGGAAGTAAACATACAGAA
AAGCTTCTCTTTTTCTGGAAACAGTCTGAACAAAATACAATCTCTTTATA
TCTCATCAGTTACCTCTAGTTCCTCATTATTGGAAACAGAGTCCTGTGAA
TCACTAAACTGCCTTTACCAAACAAGTGTAAACCTCCACACACCATTAGC
AAGGGGATCCAGATAGGGCTTCACGTACACTGATGATCTGATTTTTCTTC
TATATGTCATTCGGTGCCATTGGGCAGTGCCATGGGCTGTGGACTGTATG
TTTATGTCTCCCCAAATCAAGGTGTTAAAATCCATCTCCAATGTGATGTT
CTTTTGAAGTGAGAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_k20.g1 MSMg01no490_k20.g1 CHROMAT_FILE:
MSMg01no490_k20.g1 PHD_FILE: MSMg01no490_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:20 2005
         (644 letters)



>mm_chr13_19932546_19933593
          Length = 1048

 Score = 1210 bits (626), Expect = 0.0
 Identities = 641/648 (98%), Gaps = 4/648 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtatttttgttcttttaattttgtcaccataacaattttatgggcatgaatcattagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtatttttgttcttttaattttgtcaccataacaattttatgggcatgaatcattagt 260

                                                                       
Query: 61  ctcattttataaataaggaaacaaactaaaaaaaa----tgtgatagtatatccagaaca 116
           |||||||||||||||||||||||||||||||||||    |||||||||||||||||||||
Sbjct: 261 ctcattttataaataaggaaacaaactaaaaaaaaaaaatgtgatagtatatccagaaca 320

                                                                       
Query: 117 ccattaacaaacatgtaacttggtattatttttccagtcatactaattatatttacaatc 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccattaacaaacatgtaacttggtattatttttccagtcatactaattatatttacaatc 380

                                                                       
Query: 177 caattatctaatatttattgaatcaatgctgtcttatgttgtacttggcacccctggaag 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caattatctaatatttattgaatcaatgctgtcttatgttgtacttggcacccctggaag 440

                                                                       
Query: 237 acagtggtttcttgtgttcattaggtgtgttctttaacatgtcctgtaagtatgaccgtc 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagtggtttcttgtgttcattaggtgtgttctttaacatgtcctgtaagtatgaccgtc 500

                                                                       
Query: 297 tgaatggtgctaataagagctatcttctcaggtctttacccttttcccccctgagccaac 356
           |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 tgaatggtgctactaagagctatcttctcaggtctttacccttttccctcctgagccaac 560

                                                                       
Query: 357 tgaggaagtaaacatacagaaaagcttctctttttctggaaacagtctgaacaaaataca 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaggaagtaaacatacagaaaagcttctctttttctggaaacagtctgaacaaaataca 620

                                                                       
Query: 417 atctctttatatctcatcagttacctctagttcctcattattggaaacagagtcctgtga 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atctctttatatctcatcagttacctctagttcctcattattggaaacagagtcctgtga 680

                                                                       
Query: 477 atcactaaactgcctttaccaaacaagtgtaaacctccacacaccattagcaaggggatc 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atcactaaactgcctttaccaaacaagtgtaaacctccacacaccattagcaaggggatc 740

                                                                       
Query: 537 cagatagggcttcacgtacactgatgatctgatttttcttctatatgtcattcggtgcca 596
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cagatagggcttcacatacactgatgatctgatttttcttctatatgtcattcggtgcca 800

                                                           
Query: 597 ttgggcagtgccatgggctgtggactgtatgtttatgtctccccaaat 644
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttgggcagtgccatgggctgtggactgtatgtttatgtctccccaaat 848


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1048
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1038
Effective search space:   658092
Effective search space used:   658092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)