BAC Information

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BAC

Clone NameMSMg01-491I11
Chromosome13 (Build37)
Map Location 62,386,291 - 62,386,656
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435362, Cts7, Cts7-ps, EG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430
Downstream geneLOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491I11.T7 (MSMg01no491_i11.b1)MSMg01-491I11.TJ (MSMg01no491_i11.g1)
ACCAG569502AG569503
length748779
length of high quality
(start - end)
314 (60 - 373)486 (63 - 548)
definitionCHROMAT_FILE: MSMg01no491_i11.b1 PHD_FILE: MSMg01no491_i11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:28 2005CHROMAT_FILE: MSMg01no491_i11.g1 PHD_FILE: MSMg01no491_i11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
AAAATTCCCACTGAAGAGAGAAACTGTGTGAATAATGTGGTAAGGCCTTT
GCAGTTGACATTGACATTGATCTCATCATGTATAAATTAACACAGACTTG
TAAGAAATCTCATAAAAATAAAAATAAGAAATGTCGTAAGCTTGTGTGTG
GACCAGTCATTTTTTTTTTCTTGAGAAAAATCCATGCTGCAGGTTAACCC
TGTAAATGGAGCCACTGTGGAAACATTTTGTATGTCACAGTATCTGTATG
CGAGAGTAAAACCTTTAGCATGGACTGGATCCCTTAAAGTTTGCGTGTCA
CAATAATCTTTTAGGACTTTAAAGAACTCAAAAATAAGGCAATCTATGAC
TCTGATGGACATGGTTCCATCCTTGTGCCAACCCAGTTACATTAATTCCC
ACCAAATTAATCATTTCTTGAAAAAAACCTTTAAAAAATACCTTCTCCCT
CCTGGCGCGTTTTGGTACCTTTTTCTTTTTTTTTTTTATTTTTTACGGGA
ATAACCATAGATCAACCCCTCATTTCGGTGGGGTAAAATATAAAAAAAAA
AAATAAAAATANTNNCTTTTTTTCCGGTTGTTTAAGCCCCGTTTCTTTCT
TGGNGTATTCTTATTTTTATAACTTTTATCTTATCTAATTAGGATGATGT
TCTTTTCTTTGTTTTTGTTGTTATAAAAAAAATAAAAACATACCTCCC
GGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXAATCTTTCACTGCCAATCCAATGAAGCCTAAATTGGCA
GAACCAACTAACCTGGCACCTTGTGGGTTTTAAGAAAATTAACCACCAGG
CGAAGAATGAGCATAAACTGAAGCTAGCTGCGCTCCTCCCCACTCCAAAC
CCCACAACCAGCACATATATACCAGACAGAAGTACAGCTTGGTCCTTATA
TGGGTCCACTAACAAATGGAAGGGGTCTTTCCCTGAATATGTTGACTGCC
AGACGATTTTATTCCCCTAACTAAGCAGTACTGTCTGAACTCAGTGAGAG
AGGGTGTGTCTAGTCCTGCAGTGACTGATGTGTGAATATTTGCAGATTAG
AGGACTGGGTGGAGGTGGATAGGGTAGTTGGAAGTCATACACAGGGAAGG
CTCCCTTTTCAGAGAAGAGAAGGGGGAACAGGGGAAGGAGTAGTGGAGAT
ATAAGGGAGAGGGAACTAATATTGAAATGTAAAGTGGTCTTAACCATTCT
GACAGGTGTGAGGTGGAAACTCAAGGTTGTTTTGAATTGGATTTCCCTGT
AGATAAATGAATTTTATAAATAGGTCATGATACTGGTGTGTAATGTTTTT
TTTTCTCTTGATCCTGGGGTAAATATATGTCTGTATGAATTTCTTGAATT
TTGAGGCTTATGCGGTGATTCGGCTATGTGTGTGTTCCTCTGGTTATCTA
TTGGAGTCTGCCTTTGTTTTTAATTCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_i11.g1 MSMg01no491_i11.g1 CHROMAT_FILE:
MSMg01no491_i11.g1 PHD_FILE: MSMg01no491_i11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:28 2005
         (486 letters)



>mm_chr13_62385771_62386656
          Length = 886

 Score =  685 bits (354), Expect = 0.0
 Identities = 363/366 (99%)
 Strand = Plus / Minus

                                                                       
Query: 121 ctcctccccactccaaaccccacaaccagcacatatataccagacagaagtacagcttgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 ctcctccccactccaaaccccacaaccagcacatatataccagacagaagtacagcttgg 827

                                                                       
Query: 181 tccttatatgggtccactaacaaatggaaggggtctttccctgaatatgttgactgccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 tccttatatgggtccactaacaaatggaaggggtctttccctgaatatgttgactgccag 767

                                                                       
Query: 241 acgattttattcccctaactaagcagtactgtctgaactcagtgagagagggtgtgtcta 300
           |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 acgatccaattcccctaactaagcagtactgtctgaactcagtgagagagggtgtgtcta 707

                                                                       
Query: 301 gtcctgcagtgactgatgtgtgaatatttgcagattagaggactgggtggaggtggatag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 gtcctgcagtgactgatgtgtgaatatttgcagattagaggactgggtggaggtggatag 647

                                                                       
Query: 361 ggtagttggaagtcatacacagggaaggctcccttttcagagaagagaagggggaacagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ggtagttggaagtcatacacagggaaggctcccttttcagagaagagaagggggaacagg 587

                                                                       
Query: 421 ggaaggagtagtggagatataagggagagggaactaatattgaaatgtaaagtggtctta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ggaaggagtagtggagatataagggagagggaactaatattgaaatgtaaagtggtctta 527

                 
Query: 481 accatt 486
           ||||||
Sbjct: 526 accatt 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)