Query= MSMg01no491_i13.b1 MSMg01no491_i13.b1 CHROMAT_FILE:
MSMg01no491_i13.b1 PHD_FILE: MSMg01no491_i13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:28 2005
(690 letters)
>mm_chr13_89151861_89152949
Length = 1089
Score = 1265 bits (654), Expect = 0.0
Identities = 681/692 (98%), Gaps = 5/692 (0%)
Strand = Plus / Minus
Query: 1 gctgaagagtaaagtagatccactgtcttcatacacctatgatttttgtctcaaactggt 60
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 837 gctgaagagtaaagtagatccactgttttcatactcctatgatttttgtctcaaactggt 778
Query: 61 aacatgaggagagctaagtcataaaaagtattggtgcttcatacattcatattttgcaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 aacatgaggagagctaagtcataaaaagtattggtgcttcatacattcatattttgcaca 718
Query: 121 gtataaagcagaacaactctcatatatggtctattttatgagcactttacctcatgttta 180
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 717 gtataaagcagaagaactctcatatatggtctattttatgagcactttacgtcatgttta 658
Query: 181 cctaaatgaaaacccagggaataaagcaaatgctaccagtaggaaagatttttatttctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 cctaaatgaaaacccagggaataaagcaaatgctaccagtaggaaagatttttatttctt 598
Query: 241 caaat--aatttttttgtagcaaagatgacccaacaggtgttgaattaatcccttaacag 298
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 caaataaaa---ttttgtagcaaagatgacccaacaggtgttgaattaatcccttaacag 541
Query: 299 gactaaatcatacatgtaaattaattcaacaaattgttctcaaatggcattgaaattgca 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gactaaatcatacatgtaaattaattcaacaaattgttctcaaatggcattgaaattgca 481
Query: 359 gtgctgattttgatgtgccaacagcacatgctcctgttgggcataatacttaatgagatg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gtgctgattttgatgtgccaacagcacatgctcctgttgggcataatacttaatgagatg 421
Query: 419 catgggaaattttgaattagatgagtgttaaaagtggtctttagggaaatccttagttaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 catgggaaattttgaattagatgagtgttaaaagtggtctttagggaaatccttagttaa 361
Query: 479 aattcactccaataatttaattgaaacactgtatatttaactagattagtatctatagca 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aattcactccaataatttaattgaaacactgtatatttaactagattagtatctatagca 301
Query: 539 taatggaaacaagatgctattaacaaatttaggtcaaggtactatcccttttatggactt 598
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 300 taatggaaacaagatgctattaacaaatttaggtcaaggtactatcctttttatggactt 241
Query: 599 atgagataatagttcttatttttaaaaaagtttcttcaagtgctatgttctgaaccccct 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 atgagataatagttcttatttttaaaaaagtttcttcaagtgctatgttctgaaccccct 181
Query: 659 ccccagaatagctgtaaccattctgctacatg 690
|||||||||||||||||||| |||||||||||
Sbjct: 180 ccccagaatagctgtaaccactctgctacatg 149
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1089
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1079
Effective search space: 733720
Effective search space used: 733720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no491_i13.g1 MSMg01no491_i13.g1 CHROMAT_FILE:
MSMg01no491_i13.g1 PHD_FILE: MSMg01no491_i13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:29 2005
(608 letters)
>mm_chr13_89008489_89009496
Length = 1008
Score = 1029 bits (532), Expect = 0.0
Identities = 588/608 (96%), Gaps = 4/608 (0%)
Strand = Plus / Plus
Query: 1 aatacacaaaatgactgcaaaatcatttccagagtaaggggaggggggaaacatagaatt 60
|||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||
Sbjct: 201 aatacacaaaatgactgcaaaatcatttccagagtaagggaagggggaaaaca--gaatt 258
Query: 61 gataaacatttaaatgaagagatgcagaagggatgaaaaggcacaggctaaacactttga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gataaacatttaaatgaagagatgcagaagggatgaaaaggcacaggctaaacactttga 318
Query: 121 aggtctggtagtaacaccgacagaagagttacagcaagaaaaaaagagtaagattcacag 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 319 aggtctggtagtaacaccgacagaagagttgcagcaagaaaaaaagagtaagattcacag 378
Query: 181 tcgactcactgatatgaattgtggaggttctcattgtgtgacctaagcccagggaggaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tcgactcactgatatgaattgtggaggttctcattgtgtgacctaagcccagggaggaaa 438
Query: 241 acctattgtatcgtgtcaggtgaataataccattattacaagccagttagaactgacatg 300
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 439 acctattgtatcgggtcaggtgaataataccattactacaagccagttagaactgacatg 498
Query: 301 aaaa--acattcctttcacaacaagagataaactatgattacaatttcataattattttt 358
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aaaatcacattcctttcacaacaagagataaactatgattacaatttcataattattttt 558
Query: 359 aaaaggcagattaattaaattttaaaaaagggcttcatgcattgggaaacagaagagact 418
||||||||| |||||||||||| |||||| || |||||||||||||||||||||||||||
Sbjct: 559 aaaaggcaggttaattaaatttaaaaaaaaggtttcatgcattgggaaacagaagagact 618
Query: 419 gctgctgttccccaggatccccacttttatctgtactaatattgtttcccacttaaactt 478
|||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||
Sbjct: 619 gctggtgttccccaggatcctcacttttatctgtgttaatattgtttcccacttaaattt 678
Query: 479 tactctattttctgacacccagggggcatttggtcgcgggtttaacttttctaatttatc 538
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 679 tactctattttctgacacccagggggcatttggtcgtgggtttaacttttctaatttatc 738
Query: 539 aatcaataacgaagataattcattttaaaaacttggtccatgttgcttgtaaatgtcata 598
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 739 aatcaataacgaagataattcatttttaaaacttggtccatgttgcttgtaaatgtcata 798
Query: 599 gcatttac 606
||||||||
Sbjct: 799 gcatttac 806
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space: 596804
Effective search space used: 596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
