BAC Information

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BAC

Clone NameMSMg01-493K18
Chromosome13 (Build37)
Map Location 102,192,262 - 102,192,734
singlet/doubletsinglet
Overlap genenone
Upstream geneNaip1, Gtf2h2, Ocln, LOC667861, Marveld2, Rad17, Taf9, Ccdc125, Cdk7, Mrps36, Cenph, Ccnb1, Slc30a5, LOC619865, LOC619917, EG619937, 4933416M06Rik, LOC100039971, LOC100039983
Downstream genePik3r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493K18.T7 (MSMg01no493_k18.b1)MSMg01-493K18.TJ (MSMg01no493_k18.g1)
ACCAG571134AG571135
length758746
length of high quality
(start - end)		71 (46 - 116)473 (74 - 546)
definitionCHROMAT_FILE: MSMg01no493_k18.b1 PHD_FILE: MSMg01no493_k18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:18 2005CHROMAT_FILE: MSMg01no493_k18.g1 PHD_FILE: MSMg01no493_k18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGCGGAT
TCACTTTCTCTCTCTTTCTTTCTTTCTTCCTTCCTTCCTTCCTTCCTTCC
TTCCTTCCTTCCTTACTTACTTACTTACTTACTTACTTACTTCCGTCCTG
CCTTCCTTCCTTCCTTCCTTCCTTCGGTGCTTTCTTGCTTTCTTTCGGTC
TTTCTTTCTTTCTGTCTTTCTTTCTTTCTTTCTTTCTTTCTTTGTTTCTT
GCTTTCTTTCGTTCGTTCTTTCTGTCTGGTGTTGTTTTTGGTTGGGGGGG
GGTTTTTTTAGACTGGGTTTCTTTGGGTAGGCCGGGCTGGGCTGGGACTC
GGTCTGGAGAGCAGGGTGGGCTTGATCTGAGAAATCCGGCTGGGTCTGGC
TCCGGGGGGGCGGGATTAAGGAGGTGCGCCACGCACTGGCTGAGAGGGAT
TCTCGTTCTTGGATGGGGGAAGTTTGGGCCTTTCTAGGGTGGTGAGTCAC
TCAGTAGGGGCTTGGGCGTGAGGGGAGATTTGTATAGTTGGGCCTAAGGG
AGGCTTCTTTCCGTGACTGGGGGCTGACTGTTTATTGCGGCGGTTGGGAT
TGTGTAGGGGTGTGTATTTATGCCAGGTGCATGGGGGGGGTTAAAGGACA
CCGGGGGTGGGGTATAAATGGAGGGGTTTGCCCACGGCGGGGGATGGGGC
GGTTTGTGTGGGGGGGGGGGCTGTAGTGGAGATTTGGGTGGGGGTGGGGG
GCCATGTT

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXGCCACTCTAAGGCCTTTGCTAGTAAGGC
TGAACTGGAACGAGACACTTTCCAACGCCTCCCTAAATTAATCTTAGTCT
CATCCTCAGTGGCCACTCTCATAATCGAATAGGGCCTTTTTTCCCAGCAT
TCAACTGTGGCAGTCACCCATTCATTTCCCCCTTCCACTTTCTACTCTGA
GGAAATAGAGGACACAGGATTGGTGATCACCCCTTAATCCATGAAATCAA
ATGCAGTGATTTTTTTGCCCATTGACAAGAACTTGAATTTGTGTTTTGAT
TGTTGTTGTTATTGTTTTGTTTGTTGTTGTTGTTATTGTTTTGGTTTGGT
TTTGTTTTGCTTTAATTCACTTCATCATATTTGAGTTGCTGTTCTGGAGC
TTGGCAAGGGAGAGAAGGAGCAGAATGAGGTGGGCTGCAACTGTCAAGCC
CAGCTCAAGTTTGCTCTCGGATTCGTTCTGAGAGTGACTCATTTGATAAG
CAACACAGCTGCTGGAGGAGGCTGCCCTGTCAGGATTGATAGATGGCTGT
GTATCTCTGGAATCTTCTGCAGTTGGGCAGACCGGTTTTGGGGCCAAAGA
ACCATATCTTATTCTTCTTGAGTCATTAAGAATTCTGAAAAATTTTTCCT
CTAACGGTACAGATAAGGCAAAGTTCCCTCAATTCTGGTACTCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_k18.g1 MSMg01no493_k18.g1 CHROMAT_FILE:
MSMg01no493_k18.g1 PHD_FILE: MSMg01no493_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:18 2005
         (473 letters)



>mm_chr13_102192260_102193132
          Length = 873

 Score =  868 bits (449), Expect = 0.0
 Identities = 467/473 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccactctaaggcctttgctagtaaggctgaactggaacgagacactttccaacgcctccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ccactctaaggcctttgctagtaaggctgaactggaacgagacactttccaacgcctccc 416

                                                                       
Query: 61  taaattaatcttagtctcatcctcagtggccactctcataatcgaatagggccttttttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 taaattaatcttagtctcatcctcagtggccactctcataatcgaatagggccttttttc 356

                                                                       
Query: 121 ccagcattcaactgtggcagtcacccattcatttcccccttccactttctactctgagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ccagcattcaactgtggcagtcacccattcatttcccccttccactttctactctgagga 296

                                                                       
Query: 181 aatagaggacacaggattggtgatcaccccttaatccatgaaatcaaatgcagtgatttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aatagaggacacaggattggtgatcaccccttaatccatgaaatcaaatgcagtgatttt 236

                                                                       
Query: 241 tttgcccattgacaagaacttgaatttgtgttttgattgttgttgttattgttttgtttg 300
           ||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 235 tttgcccaaggacaagaacttgaatttgtgttttgtttgttgttgttattgttttgtttg 176

                                                                       
Query: 301 ttgttgttgttattgttttggtttggttttgttttgctttaattcacttcatcatatttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 175 ttgttgttgttattgttttggtttggttttgttttgctttaattcacttcagcatagttg 116

                                                                       
Query: 361 agttgctgttctggagcttggcaagggagagaaggagcagaatgaggtgggctgcaactg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 agttgctgttctggagcttggcaagggagagaaggagcagaatgaggtgggctgcaactg 56

                                                                
Query: 421 tcaagcccagctcaagtttgctctcggattcgttctgagagtgactcatttga 473
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 55  tcaagcccagctcaagtttgctctccgattcgttctgagagtgactcatttga 3


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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