BAC Information

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BAC

Clone NameMSMg01-493N15
Chromosome13 (Build37)
Map Location 63,226,002 - 63,226,668
singlet/doubletsinglet
Overlap gene2010111I01Rik
Upstream geneEG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524
Downstream geneFancc, Ptch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493N15.T7 (MSMg01no493_n15.b1)MSMg01-493N15.TJ (MSMg01no493_n15.g1)
ACCAG571271AG571272
length7311,182
length of high quality
(start - end)		683 (47 - 729)---
definitionCHROMAT_FILE: MSMg01no493_n15.b1 PHD_FILE: MSMg01no493_n15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:32 2005CHROMAT_FILE: MSMg01no493_n15.g1 PHD_FILE: MSMg01no493_n15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCAGATAGAGCCAGGCAGGAGATGGACACGTGGTACCTGAGCAC
AGGTATCCAGCCACATGGCAGAATGTAGATGAAAATAAATGGTTATCTTA
AGTTATGATTCTAGTCAGAAAAGCCTAGCTATATATATGTCCTAGGTATT
GTAAATATATTTTGAGTCTGAGTCTCATTTCTGGGATGGGAATGGGAGGA
AGAACCAAGGTAACTTCTACAGAAAGGTTCTGTGACTAACCTTGGAGCCC
GCATGCCCTTTAAGAGATGAGGCCTGCGGAGGGGTCCCAAGGCCTTTGGG
AGTGTGCTGTGCAGTGCCTTTGTGAGACCCTTGGTGGGTGTCTTATGACT
CCTGTGGTACTTGTAGACGGCTAACAGAAGCAAACCTGTCCTTCCTGCCC
TCTCTGCTCTCCCAAGGTGACCCTCACTTACGTCCTCACCTCACCTCACT
TACGCCCTCAGTGTCCTTAGGTATTGTAGGTGAGGGACATCTGTGCTTTT
GCACTCCACTCCCCAGACAGTGAGCCAAATATGGTTCCTTTATTCCTCAT
CACTAGCCTGTGTTGGGCATGTCGGTGTAGTAACAAGGCTGGCTGATACA
TAAGCTTTAGCATTTACTAATTTTCTAGGATTTTTTTTTTCTGACACAGG
GTCTTACTCAGTAACCCAAGGTATCCTGAAN

TATGTAATATGGCGCTGCGACCGTCCCGCCTGCCTGTATTCCCCACCGCC
CTCCTTGTCCTCCACTCCAATTTATTCCTCGCAACACCCACCGTTCTGTC
CGCTTGTCCGCATAGTACAGGCAAGTCGGTCATATTCGCTCCCAGCGTGC
ACTTGCGTCCAACCTATATGATCAACACTAGACCCCTCTGTAGCCTCGCT
ACTTAGTATACATTATGCTGGCTTCCACAAATTAAACACATTTTGCGACA
CAGGGCGAGTATCTTTCTGTGCAGCTTCGTGGATCGGCACTACACCAGCG
CAAGCTAAGTGCATGTCCATGCAGGGTGTGACACGCTCGAGAACGACATG
GCGAGATCAAATTGGAGGAGTATTCCGCTGACCGTAATAATGGTATGCTT
TTAATAGTAGAAATGTCTCGCGTACCGTCACTGTCGCGGCTCGTTGTTAA
GATGTTGCTTTCTGCGGCCTCTGTGTATGTATGATGTGTGCGGGGGGTGT
CTCGCGCGCAATATTCGGATGTGGTTGACAACCACGCGGACACAATGTGG
GTGCTTCCTCGGGGTNTCGTGGATCCTCGATTAATGTGTCGCTCTGAGTT
CGCGGCGTGTGGAGAGTGCGTGCGTTCATTATTGCAGACGACGGCGATGG
TCGCGGTCTGTCAAATTAGAGTTGCGGTGCAGTGTCTGGCGGGCAGCGCG
GAGATTCCTGCGGAGAATCGATACACTAACTATNTATCGGCCGGCCAACC
ATAAGTAGATCTTCTGTCGCGAAAGCGTAAGACTGTGAGACGATCATACA
CTCCANCCACCGCACGACCGATCAATAATTAGTCCTTAGCGCCGCGATCG
GCCTCTCGCTCTCTAAAGTGTATAAGATACCGGTCGTAGTTTACCGTGTG
AGATCGGGCCCAATATTTACGCGGCACGCATTTTCTCCACGATGTCGCGC
ACATAGTTAACGACGCATACTGTATGGAAGAGATATTACCGCTCCTGATC
TCTTCGCGTGCGTGAGACCCTATAGTGACAGGTGATAATGAGAGACTGCT
GTCTATCTATGACTAATGCGAACAATTCTGCCTCGCTCGATCGCTCGCGT
GATACTGCCTAGTAAGATATCAGTAGGCAGCGAAAATAGGAGAGNTTATG
CAGACGTGTTATACATTTCTGATTACTTCGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_n15.b1 MSMg01no493_n15.b1 CHROMAT_FILE:
MSMg01no493_n15.b1 PHD_FILE: MSMg01no493_n15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:32 2005
         (683 letters)



>mm_chr13_63225794_63226876
          Length = 1083

 Score = 1212 bits (627), Expect = 0.0
 Identities = 661/681 (97%), Gaps = 16/681 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcagatagagccaggcaggagatggacacgtggtacctgagcacaggtatccag 64
           ||||||||    |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 209 gaattctc----agagccaggcaggagatggacatgtggtacctgagcacaggtatccag 264

                                                                       
Query: 65  ccacatggcagaatgtagatgaaaataaatggttatcttaagttatgattctagtcagaa 124
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcacatggcagaatgtagatgaaaataaatggttatcttaagttatgattctagtcagaa 324

                                                                       
Query: 125 aagcctagctatatatatgtcctaggtattgtaaatatattttgagtctgagtctcattt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagcctagctatatatatgtcctaggtattgtaaatatattttgagtctgagtctcattt 384

                                                                       
Query: 185 ctgggatgggaatgggaggaagaaccaaggtaacttctacagaaaggttctgtgactaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgggatgggaatgggaggaagaaccaaggtaacttctacagaaaggttctgtgactaac 444

                                                                       
Query: 245 cttggagcccgcatgccctttaagagatgaggcctgcggaggggtcccaaggcctttggg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttggagcccgcatgccctttaagagatgaggcctgcggaggggtcccaaggcctttggg 504

                                                                       
Query: 305 agtgtgctgtgcagtgcctttgtgagacccttggtgggtgtcttatgactcctgtggtac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agtgtgctgtgcagtgcctttgtgagacccttggtgggtgtcttatgactcctgtggtac 564

                                                                       
Query: 365 ttgtagacggctaacagaagcaaacctgtccttcctgccctctctgctctcccaaggtga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttgtagacggctaacagaagcaaacctgtccttcctgccctctctgctctcccaaggtga 624

                                                                       
Query: 425 ccctcacttacgtcctcacctcacctcacttacgccctcagtgtccttaggtattgtagg 484
           |||||||||||||||||||| ||          |||||||||||||||||||||||||||
Sbjct: 625 ccctcacttacgtcctcacccca----------gccctcagtgtccttaggtattgtagg 674

                                                                       
Query: 485 tgagggacatctgtgcttttgcactccactccccagacagtgagccaaatatggttcctt 544
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 675 tgagggacatctgtgcttttgcactccactccccagacggtgagccaaatatggttcctt 734

                                                                       
Query: 545 tattcctcatcactagcctgtgttgggcatgtcggtgtagtaacaaggctggctgataca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tattcctcatcactagcctgtgttgggcatgtcggtgtagtaacaaggctggctgataca 794

                                                                       
Query: 605 taagctttagcatttactaattttctaggatttttttttt--ctgacacagggtcttact 662
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 795 taagctttagcatttactaattttctaggattttttttttttctgacacagggtcttact 854

                                
Query: 663 cagtaacccaaggtatcctga 683
           |||||||||||||||||||||
Sbjct: 855 cagtaacccaaggtatcctga 875


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space:   722129
Effective search space used:   722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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