Query= MSMg01no494_d24.b1 MSMg01no494_d24.b1 CHROMAT_FILE:
MSMg01no494_d24.b1 PHD_FILE: MSMg01no494_d24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:03 2005
(655 letters)
>mm_chr13_13937892_13938945
Length = 1054
Score = 673 bits (348), Expect = 0.0
Identities = 381/392 (97%), Gaps = 3/392 (0%)
Strand = Plus / Minus
Query: 5 gaattcaatcctttattacaactctaaggcattgcaatttaggtagtactctaatttata 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gaattcaatcctttattaaaactctaaggcattgcaatttaggtagtactctaatttata 331
Query: 65 ctaactatcatagtgtgataggtcggaaatgacacagatctgtagaaatagtcattttat 124
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ctaactattgtagtgtgataggtcggaaatgacacagatctgtagaaatagtcattttac 271
Query: 125 tagtatatgttaatcttatatcactgtgtttcatagtaatttttttgttcatgtggacaa 184
|||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||
Sbjct: 270 tagtatatgttaatcttacatcactgtgtttcatagtaa-ttttttgttcatatggacaa 212
Query: 185 tgtacactgtattagtcagggttctctagattcacagaactcatgggtagtctctataca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 tgtacactgtattagtcagggttctctagattcacagaactcatgggtagtctctataca 152
Query: 245 gtaagggaatttgttatgatgaattacca-tctgtagtccagctccccaacaatggtcat 303
|||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||
Sbjct: 151 gtaagggaatttgttatgatgactta-cagtctgtagtccagctccccaacaatggtcat 93
Query: 304 ctgtgaatgggaagtccaagaatctagtagttgctcagtcccacaggctagttgtttcag 363
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 92 ctgtgaatgggaagtccaagaatctagtagttgctcagccccacaggctagttgtttcag 33
Query: 364 ctggccttctgtagaagtagcttccagcagat 395
||||||||||||||||||||||||||||||||
Sbjct: 32 ctggccttctgtagaagtagcttccagcagat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1054
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1044
Effective search space: 673380
Effective search space used: 673380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no494_d24.g1 MSMg01no494_d24.g1 CHROMAT_FILE:
MSMg01no494_d24.g1 PHD_FILE: MSMg01no494_d24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:03 2005
(623 letters)
>mm_chr13_13765840_13766862
Length = 1023
Score = 1181 bits (611), Expect = 0.0
Identities = 620/623 (99%)
Strand = Plus / Plus
Query: 1 ataaaaatataagacacagatcggagagatggctcagtagctaagagcacttgctgctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataaaaatataagacacagatcggagagatggctcagtagctaagagcacttgctgctct 260
Query: 61 ttcagagggtctaagttcagacagattccagcacctacctactactgcctataactctag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcagagggtctaagttcagacagattccagcacctacctactactgcctataactctag 320
Query: 121 ctccaagggatctgataccttcttttgacctttgcaggttctaggtatacatgtgagagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctccaagggatctgataccttcttttgacctttgcaggttctaggtatacatgtgagagc 380
Query: 181 taatatacatacacataaattaaaatttaaaaatttaatatataggcattcaaggaataa 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatatacatacgcataaattaaaatttaaaaatttaatatataggcattcaaggaataa 440
Query: 241 acaggtaaacagtttatttttgagagatcagaattacacagtaagggggaactgtaaaat 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaggtaaagagtttatttttgagagatcagaattacacagtaagggggaactgtaaaat 500
Query: 301 gtgaaaccacagaaataattgttaagacagttggagttcaaagaatgtagaagttaacag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgaaaccacagaaataattgttaagacagttggagttcaaagaatgtagaagttaacag 560
Query: 361 tcacaaaatccaaagtgagaaattataaagggaatacttacatactatatttgatactat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcacaaaatccaaagtgagaaattataaagggaatacttacatactatatttgatactat 620
Query: 421 ggagcaggccttatttgtttctttttgaacatttttttgtcaaaattcatgtctaatgat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggagcaggccttatttgtttctttttgaacatttttttgtcaaaattcatgtctaatgat 680
Query: 481 ttacttttaaaggtttttgttgttgttattgttttaccctaaaatttttgatgtctcaaa 540
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 681 ttacttttaaaggtttttgttgttgttattgttttaccctaaaatttttgctgtctcaaa 740
Query: 541 accattttgaattccagatggcaagatctttcaggagaaagtgcagtcactcgcgtacct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 accattttgaattccagatggcaagatctttcaggagaaagtgcagtcactcgcgtacct 800
Query: 601 gaggcattctagcagcggagggc 623
|||||||||||||||||||||||
Sbjct: 801 gaggcattctagcagcggagggc 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
