Query= MSMg01no494_m21.b1 MSMg01no494_m21.b1 CHROMAT_FILE:
MSMg01no494_m21.b1 PHD_FILE: MSMg01no494_m21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:44 2005
(703 letters)
>mm_chr13_4437398_4438501
Length = 1104
Score = 1319 bits (682), Expect = 0.0
Identities = 694/698 (99%), Gaps = 1/698 (0%)
Strand = Plus / Plus
Query: 7 gaattcaagaagaagaaa-tattatctcccatgattgtcaatgtcacaccagtgtctgtg 65
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcaagaagaagaaaatattatctcccatgattgtcaatgtcacaccagtgtctgtg 266
Query: 66 ttaggtaaagtaactgagcaaactctggaaattcaataattcaaagttaaatccattctt 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ttaggtaaagtaactgagcaaactctggaaattcaataattcaaagttaaatccattctt 326
Query: 126 caacattttcaggtttggtgtacttttcatcgtccagaactcgtacgggtctgcttggaa 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 caacattttcaggtttggtgtacttttcatcgtccagaactcgtacgggtctgcttggaa 386
Query: 186 cagtcattgaagcaactccagttggactatgtggacctgtacctcattcatttcccaatg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cagtcattgaagcaactccagttggactatgtggacctgtacctcattcatttcccaatg 446
Query: 246 gccatgaaggtatgcagtatggataaccaacaaacttcagctctaatttataagttttct 305
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 447 gccatgaaggtatgcagtatggataaccaacaaacttcagctctaatttataagtttttt 506
Query: 306 ggttggttggattctataaagtttaaaaacatagttcagttaattttagaaaaccttcca 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ggttggttggattctataaagtttaaaaacatagttcagttaattttagaaaaccttcca 566
Query: 366 aatgctttatgcaaggagttgatatgattgtgtaactgaagaatctaagtcattaatagt 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aatgctttatgcaaggagttgatatgattgtgtaactgaagaatctaagtcattaatagt 626
Query: 426 ttagaattccaagtagtctttgaaatgtctctgcttttcaattgctgtattactataaaa 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ttagaattccaagtagtctttgaaatgtctctgcttttcaattgctgtattactataaaa 686
Query: 486 ttgcaaggttttaaaaaaaggtgcttttattttattttatgtgtgggttttatgtgcatg 545
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ttgcaaggtttaaaaaaaaggtgcttttattttattttatgtgtgggttttatgtgcatg 746
Query: 546 tatatcttctactatgtctgtacctagtacacaatggatccaaaagatggtattaactcc 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tatatcttctactatgtctgtacctagtacacaatggatccaaaagatggtattaactcc 806
Query: 606 tctgggctaagagttacaaacagttgtgaaatgccttatgggtggcagaaattgaaccta 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 tctgggctaagagttacaaacagttgtgaaatgccttatgggtggcagaaattgaaccta 866
Query: 666 tatcatctggaggagcagcaaatgctcttaatcattga 703
||||||||||| ||||||||||||||||||||||||||
Sbjct: 867 tatcatctggaagagcagcaaatgctcttaatcattga 904
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1104
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1094
Effective search space: 758142
Effective search space used: 758142
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no494_m21.g1 MSMg01no494_m21.g1 CHROMAT_FILE:
MSMg01no494_m21.g1 PHD_FILE: MSMg01no494_m21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:44 2005
(688 letters)
>mm_chr13_4591271_4592358
Length = 1088
Score = 1062 bits (549), Expect = 0.0
Identities = 570/577 (98%)
Strand = Plus / Minus
Query: 1 cataaaactgatggtccagaacttgttcctgtctgtattatgagaatataaagtatcacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 cataaaactgatggtccagaacttgttcctgtctgtattatgagaatataaagtatcacc 518
Query: 61 attcttccctagccaactgttggttggactaaagaaaatgggggagccccaatcctctgt 120
||| || |||||||||||||| |||||| ||||||||||| |||||||||||||||||||
Sbjct: 517 attttttcctagccaactgttagttggaataaagaaaatgtgggagccccaatcctctgt 458
Query: 121 gtaaagacactgactatcccttgagaacatgctctcaaagcaattattttaagaaacata 180
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 457 gtaaagacactgactatcccgtgagaacatgctttcaaagcaattattttaagaaacata 398
Query: 181 cataaatatttctttcaggccacagccatgtctaccctatgaaaatctaaataccccctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 cataaatatttctttcaggccacagccatgtctaccctatgaaaatctaaataccccctt 338
Query: 241 cttagctagggaagcatgtggtgtctcatcttatatcaaagttttgtcatcctgctgcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 cttagctagggaagcatgtggtgtctcatcttatatcaaagttttgtcatcctgctgcct 278
Query: 301 tccaaactacagggaacctaaaacttgctggtgatatagaaacaatgattttcaacttga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tccaaactacagggaacctaaaacttgctggtgatatagaaacaatgattttcaacttga 218
Query: 361 ttcccaaaaggaaaatatttttattagatatattctctatttacatttcaaatgttatcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 ttcccaaaaggaaaatatttttattagatatattctctatttacatttcaaatgttatcc 158
Query: 421 cctttcctattttcccttctgaaaattctctatcctctccccacaccacctgctccccaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 cctttcctattttcccttctgaaaattctctatcctctccccacaccacctgctccccaa 98
Query: 481 aacacccactccagattccttgtccaggcattcctgtatactggggcataaaaccttcac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 aacacccactccagattccttgtccaggcattcctgtatactggggcataaaaccttcac 38
Query: 541 aggaccaagggcctctcctcccattgatgactgacta 577
|||||||||||||||||||||||||||||||||||||
Sbjct: 37 aggaccaagggcctctcctcccattgatgactgacta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space: 730884
Effective search space used: 730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
