BAC Information

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BAC

Clone NameMSMg01-495K11
Chromosome13 (Build37)
Map Location 73,830,752 - 73,831,066
singlet/doubletsinglet
Overlap geneSlc6a19
Upstream geneLOC621486, Irx4, LOC100042864, Ndufs6, Mrpl36, Aytl2, Slc6a3, Clptm1l, Tert, Slc6a18
Downstream geneSlc12a7, Nkd2, EG666360, Trip13, Brd9, Zdhhc11, LOC100042909, 2900041A09Rik, LOC621824, Cep72, Slc9a3, Exoc3, Ahrr, Pdcd6, Sdha, Ccdc127, AI595366, Zfp72, LOC666670, LOC634386, LOC100042547, LOC666683, LOC547136, BC012278, LOC434490, Arts1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495K11.T7 (MSMg01no495_k11.b1)MSMg01-495K11.TJ (MSMg01no495_k11.g1)
ACCAG572646AG572647
length1,151731
length of high quality
(start - end)
---315 (334 - 648)
definitionCHROMAT_FILE: MSMg01no495_k11.b1 PHD_FILE: MSMg01no495_k11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:46 2005CHROMAT_FILE: MSMg01no495_k11.g1 PHD_FILE: MSMg01no495_k11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCGGGTTGGAGGGAGTGAGCGGGGGGGCGGCTTCCCGCCTTGATGGGG
GGGGATCCCCCGGGGGTGGCCGCGCTCCCGCGGGTGGGTACGTCCCCGCG
GGTTGGTGTGATGACGGTGCGCAGGGACCTGGCCTGCAGTACGTAGTTGT
ATCCGGAGTTCGGCCGGCGCCCGTGGGTGGTTCGTGCGCGCCGCCTTCCC
GTTTATCGCCTTTTTCATGCGCCATAAAGAAAGCGGTGTGTGTTATGGAG
GCTGCGGCGGGGGTGACTTCCCGAGTGTGGCGTTTCGCGGCATGGAGCCT
GGCCGTGGGCTTGTCAGGTGCACGCCGCGCAATACTTTAGCGTGCCGAAC
GTTGGCGCCTGCGGCGCGATTTTTAGATCCAGTCCCGCTTTCTCCCGCGA
TTTTGGGTACAATNGCCGTACTTTGTCCGCACCGCTCTTACCCATTCTTC
TATGTGCTCGTGTTTGCCCCCGGAGGAGCCCTTATAACTATTCTCCGCTT
TTCCCCACCGGCGGTTGGGCGATTTATACGCCGCGGTGTGGCCGTCGATA
GCCCGCTTATCGCGGGCGACGGGACGGGGTTTCTGTGGGCCTATTGTGTG
GTTGCGGGGGAGGAAGATNCGCGGGAGGAGAGAGACCCCCAGGGGTTAGG
AAACCAGGGCGGAGGCTAAGGACCGATTAGGATCGTGAAAAACGGTAAAG
CCCGGCGGCGGTACAGCGAACGCGGTCCGTAATTCGTATTTGTCCGACCG
TGCTTCCCGACCATCGCACATGTGTCTGTTGTTCGGACGAACCTGATCCG
CTTTGGCCGTGCGCGTTGTCGCCTAGTTTTTATACATTAGTCCAGGTCGA
TGGGCGCAAGCTAGGTATATGGGACGGTGTCGTACGTAGAGGGGGGTGCT
CAGGGCGGTGATAATGATGTAGCGGAGGGCGGTTCGCGTGTGCGTCGTCG
CCCACGAGGTTGCGCTCGAATGGAGAATTGACCGATGTTTTACGCCTCGG
CGATGACGTACTATTAAACTTGTGCGCGCTAATTATGGTGGAGAGCCGCA
CGGAGGCTAANCGTGTTGGGGTGCATAAACCGCGACTAAACGTGGTGGCG
AGCGCCGATCGGCAACACGCGGGAGGCAGCGATAAATAGAGGCCGGTTAT
N
NNNCCGATGAAGTGNGAGGTCTGGNGGNCGCCTGGTTTTCACATCAGGGN
GAACNATAGAAGGATTACAAAAGCACGCTCGAACACCAGAAGGATGAGGA
ATGGGATCATGAAGGCCCCTGGATGGGAAGAAACAAGACATGCCATTACA
ATCCAGGACACCACCTGGGGACAGACACTTTAACACCTTTAAAATAACGA
TTAGATGCCACCAACACCCCTGTGGCACTTGAACAGAGCTGATATGCAGT
TGTTTTCCATGTGAGTGAGGCCGCAGTAAACTTCACAGCCTGGAAGTATC
CCTCAGCAGGTAGACAGTGTTCTTCNCTCATGNAAACACTCTCTGCTGGC
TTGAAGAAAACTGTCATTTAACAAAGCATGTGACAGTGCTACCATGCTCA
CTGAGAATAACAGAAACCCACACGAGCCTACTGGCTGGCTCCAGGCCTCA
CACTGGCCAGAGCCTCGTGGACAGAAGGACAGAGTCACAAGTTCTGAGAA
TAGCTGCGCCTAGGACAGTGTGTCACTGCACAGTCAACTAATGGTAAGTC
TGATGTCAGACACCAGCATGAAAAGGGAACTCTTTACTAGTGGTGTTGGG
CAACATGGAGGGGAAGCAAGTACCCTTTGGCTTAAAGCAGCTCCACTTGC
TGGTGTATGTTCTTNACTTCAAAGTGTAATAAGTACAATAATGGTCTCAA
ATATCTGACCACACTGCCCTCATCTGTGCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_k11.g1 MSMg01no495_k11.g1 CHROMAT_FILE:
MSMg01no495_k11.g1 PHD_FILE: MSMg01no495_k11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:46 2005
         (315 letters)



>mm_chr13_73830552_73831266
          Length = 715

 Score =  578 bits (299), Expect = e-169
 Identities = 311/315 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacactctctgctggcttgaagaaaactgtcatttaacaaagcatgtgacagtgctacc 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 aaacactctctgctggcttgaagaaaactgccatttaacaaagcatgtgacagtgctacc 260

                                                                       
Query: 61  atgctcactgagaataacagaaacccacacgagcctactggctggctccaggcctcacac 120
           ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 261 atgctcactgagaataacagaaacccagaggagcctactggctggctccaggcctcacac 320

                                                                       
Query: 121 tggccagagcctcgtggacagaaggacagagtcacaagttctgagaatagctgcgcctag 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggccagaggctcgtggacagaaggacagagtcacaagttctgagaatagctgcgcctag 380

                                                                       
Query: 181 gacagtgtgtcactgcacagtcaactaatggtaagtctgatgtcagacaccagcatgaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacagtgtgtcactgcacagtcaactaatggtaagtctgatgtcagacaccagcatgaaa 440

                                                                       
Query: 241 agggaactctttactagtggtgttgggcaacatggaggggaagcaagtaccctttggctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agggaactctttactagtggtgttgggcaacatggaggggaagcaagtaccctttggctt 500

                          
Query: 301 aaagcagctccactt 315
           |||||||||||||||
Sbjct: 501 aaagcagctccactt 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)